Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0570
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67610.1 68418.m08525 expressed protein                             27   8.4  
At4g32500.1 68417.m04626 potassium channel protein, putative sim...    27   8.4  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    27   8.4  

>At5g67610.1 68418.m08525 expressed protein
          Length = 486

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 258 KYKNKYSVSKILNVFSSISEFRFNIEICFKKN 353
           K+ +KY+ S  L V +SIS    NI++CF +N
Sbjct: 77  KHLDKYAHSLKLIVNASISGKTNNIDVCFHRN 108


>At4g32500.1 68417.m04626 potassium channel protein, putative
           similar to potassium channel [Solanum tuberosum]
           gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
           thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 880

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 504 FT*SLHGLARSGRT-DTCSAHPQTGVSWSVSSIRPRRHAFGSVAKRETKQIKL 659
           F  SL G+  + +T D   A  +TG+S  V  + P R      A    K +KL
Sbjct: 780 FKNSLFGIMSAAKTGDEGGASTRTGISEGVGGVYPARVTISGEASSSGKVVKL 832


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 358 NQFFLKQISILKRNSLIELKTFKILLTE 275
           +Q + K +S+L++N    LKT K+LL +
Sbjct: 859 SQMYNKTVSLLRQNQTALLKTVKVLLNQ 886


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,607
Number of Sequences: 28952
Number of extensions: 246703
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)