Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0569
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0612 + 4902197-4902929,4903443-4904071                           30   2.0  
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733           29   3.4  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     28   6.0  
08_01_0191 + 1590948-1591607,1591694-1592176,1592449-1592451,159...    28   7.9  
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310...    28   7.9  

>11_01_0612 + 4902197-4902929,4903443-4904071
          Length = 453

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 661 SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLAD 539
           +AA  PN V  ID+       AAA P  + PEAA  P L D
Sbjct: 25  AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64


>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
          Length = 181

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -3

Query: 676 EGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT----PEAADAPKLADNPVD--EDKP 515
           +GSA S  I  N  + ++L    +  A  I +       P A D P LAD P +  ED+P
Sbjct: 82  DGSAASFGISINHTRALELPGVCKVQAPPISQCTAVPTPPPAPDTPTLADEPAETNEDEP 141

Query: 514 A 512
           +
Sbjct: 142 S 142


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 451 AVVAESSADLASAFGASGESQQACPHLQDCLLT 549
           A VA   A  A+A G SGE +   PH+  CLL+
Sbjct: 232 AAVANGGARFAAALGRSGECKPPGPHM--CLLS 262


>08_01_0191 +
           1590948-1591607,1591694-1592176,1592449-1592451,
           1592555-1592992
          Length = 527

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 202 LISRVGSGARVNVFAASRDACRRLSTRVRRLTPSRSI 312
           L+ R  S       A  RD+C R+  R+R L P+R +
Sbjct: 14  LLLRGASAVSDQQEAGRRDSCDRIDRRIRALEPTRRV 50


>05_07_0258 -
           28729620-28729782,28730193-28730339,28730808-28731032,
           28731148-28731178,28731424-28731940
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 187 TYTLQLISRVGSGARVNVFAASRDACRRLSTRVRRLTPSRSI 312
           +Y L   +  G GA      A  DA RRLS +V   TP R +
Sbjct: 2   SYALVEEAAGGGGAEQVATQAHHDASRRLSAQVAHGTPERDV 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,833
Number of Sequences: 37544
Number of extensions: 210658
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)