Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0569
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_49232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 ERHSHSHGVVSHIYATVNLSRWQRSTS*CV 242
           +R SH+H +  ++   + LSRW R  S CV
Sbjct: 158 QRTSHAHQISRNMSINLTLSRWLRKMSMCV 187


>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 649 IPNMVKKIDLAPTVESDA-AAIPEIKTPEAADAPKLADNPVDEDKPA 512
           +P  VK++   P  + +       +K P  A AP     P D DKPA
Sbjct: 338 VPEPVKEVPARPVTKQEPFKQTKPVKEPSLAPAPTANMVPSDRDKPA 384


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 305  REGVKRRTRVDSLRHASLLAANTLTRAPLPTREINCSV 192
            R+GV+     D LRH SLL+A+T     LP  E N  +
Sbjct: 1231 RQGVE--LSADILRHISLLSASTAPYYQLPEDEYNVEI 1266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,129
Number of Sequences: 59808
Number of extensions: 243697
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)