Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0569
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    28   5.3  
AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    27   9.3  
AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 634 KKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPAD 509
           KK D  P+       +P   TP+ A  P     P  ++KP D
Sbjct: 812 KKKDTKPSAPKPKPDVPVNPTPQTAKVPVAPAPPAKDEKPKD 853


>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 670 SADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 527
           +A++ A  P     + +A    S AA   +   PEA DAPK A+ P +
Sbjct: 356 TANAEAEEPEKKTFVTMAAACASKAAKEQDGVAPEAQDAPKEAEAPAE 403


>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -3

Query: 661 SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADF 506
           S+A+ P        APT  + +   P +     A +PK    PV   KP  F
Sbjct: 233 SSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAPVAPVAPVKPKPF 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,032
Number of Sequences: 27780
Number of extensions: 179265
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)