Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0569
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54800.1 68418.m06826 glucose-6-phosphate/phosphate transloca...    28   4.9  
At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi...    28   4.9  

>At5g54800.1 68418.m06826 glucose-6-phosphate/phosphate
           translocator, putative identical to glucose 6
           phosphate/phosphate translocator [Arabidopsis thaliana]
           gi|7229675|gb|AAF42936
          Length = 388

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +2

Query: 101 LNKSLGLGNRQLSTSV*RTPLSLTWGSFTHIRYS*SLALAAEHELMCSLQAGTRVEDCQ 277
           L+  +GL  R  S+S+ R+P+SL++ S T +     LA++    L  SL+A + V  C+
Sbjct: 9   LSPKIGLFRRNPSSSLGRSPVSLSFPS-TELPKRTVLAVSKPLHLSSSLRAKSPVVRCE 66


>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 305 REGVKRRTRVDSLRHASLLAANTLTRAPLPTREINCSV 192
           R+  K+R  +D +   S+L A+++ ++ L  +EI+C +
Sbjct: 439 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHI 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,672
Number of Sequences: 28952
Number of extensions: 164299
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)