Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0568
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   0.89 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    28   0.89 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.7  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   2.7  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   4.8  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   6.3  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   6.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.3  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   8.3  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 419 LDVGTYGYDNVTNVCPYTLNVF 484
           L+ G +G D V  VCP+  N+F
Sbjct: 451 LNSGAFGLDEVFQVCPFKSNIF 472


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -2

Query: 529 LVVTRIYDDLISVQVKYIERVRAHICNVVVS 437
           L++ R+Y     +++K++ R+  H+C V +S
Sbjct: 328 LILQRLYSTNNELRIKFLGRLLGHVCGVQIS 358


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 111 NVVDWNYPDQFSKQQALRT-GALIPENALPVGIERW-RNKLFV 233
           +++ WN P QF  +Q L     L P   L + +ER  R K+FV
Sbjct: 74  DLIQWNDPSQFDNEQFLNALAVLFPR--LSIEVERHVRLKIFV 114


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +2

Query: 17  LSK*NGSEVFSFLWASLTSISNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTA 196
           LSK NG +V     A  TSIS D A  N+ V R R++     L    ++ +  D  E TA
Sbjct: 44  LSKINGVDVSLIYPALETSISKDSADLNLPVPRLRVKGKPQELAQKWAEAFPKDLVEVTA 103


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 172 APVL--RACCFENWSG*FQSTTFHENISWS 89
           APVL  + C + N++G  Q+     N+SWS
Sbjct: 19  APVLSYKKCSYRNFNGLLQARFQSNNLSWS 48


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 218 EQIVRQRS*VA--LSIPATLNYIPLDAPYEPSPKLTPYP 328
           E++V  R  V   +SIP   +Y+P+     P P    YP
Sbjct: 158 EEVVELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYP 196


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  GSEVFSFLWASLTSISNDKAPRNIL 106
           G +V SFL  SLT  + D   R IL
Sbjct: 255 GGQVISFLTESLTKYAGDPVARKIL 279


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 442 VSISANV*YPKTITLVCFDPVYSSQ 368
           +S+S+ + YP++ TL    P+Y S+
Sbjct: 288 LSLSSQILYPESTTLSEISPIYDSE 312


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 296 YEPSPKLTPYPSFEGN 343
           Y+P+PKLTP+ SF  N
Sbjct: 221 YKPNPKLTPF-SFNNN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,397
Number of Sequences: 5004
Number of extensions: 52948
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)