Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0568
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 33 0.23
01_01_0596 + 4435643-4436664,4437241-4437766 33 0.23
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 0.92
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 30 1.6
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 29 2.1
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 4.9
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 28 6.5
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 27 8.5
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 332 FEGNELGNCQTGLTTVYRVKADQCDR---LWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQ 502
F EL + Q L V +V+ DQ D+ +W DV YD N+ + L++ D+ ++
Sbjct: 35 FLKTELESIQAALEKVSKVQLDQLDKQIKIWARDVRELSYDIEDNIDTFMLHINDIEPNK 94
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 287 DAPY--EPSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDR--LWVLDVGTYGYDNVT 454
DAP +P L YP G ++ + RVK D+ +W+LD GT+ ++ V
Sbjct: 205 DAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVD 264
Query: 455 NVCPYTLNV 481
N+ + L V
Sbjct: 265 NIGDFALFV 273
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 329 SFEGNELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDL 490
+F +EL + Q + + +V DQ D ++W DV YD NV + L V DL
Sbjct: 27 TFLNSELESMQAEVDKISKVPLDQLDSQIKIWARDVRELSYDIEDNVDTFMLCVDDL 83
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 178 YQRTHCPLVSKGGGTNCSSAFLGGAQYPSYFELHSTGRSI*TIP 309
+Q T P + G T+C AF+GG Y Y GR + IP
Sbjct: 295 FQSTTFPGAATSGVTDCQQAFIGGIAYGGYAR-KIVGRVLRKIP 337
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +2
Query: 344 ELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQIIVN 514
EL + Q L V +V DQ D ++W D+ YD N+ + L V L +
Sbjct: 48 ELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRVDGLEPAKKHNF 107
Query: 515 TCYDQK 532
TC K
Sbjct: 108 TCLVDK 113
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 143 LEAAGSQDWCSDTRERTARWYRKVEEQI 226
+E S+ CS+T E+ RWY + +E++
Sbjct: 246 IETIRSEFSCSETCEKLQRWYGETDEEV 273
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 114 VVDWNYPDQFSKQQALRTGALIPENALPVGIERWRNK 224
+VD DQ K +R I E+ P G ++WRNK
Sbjct: 146 LVDELLSDQHLKNYRMRKVREIQESRTPGGSQKWRNK 182
>03_05_0834 -
28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 96 LGALSLLMLVRLAHRKLKTSLPFYLLKTS 10
LG LS L ++RLA+ KL S+P L + +
Sbjct: 722 LGQLSKLQILRLAYNKLSGSIPGSLFQVA 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,467
Number of Sequences: 37544
Number of extensions: 356777
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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