Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0568
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 31 0.53
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 29 3.7
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 6.5
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96) 28 6.5
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1) 28 6.5
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24) 27 8.6
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 27 8.6
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 27 8.6
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 35 SEVFSFLWASLTSISNDKAPRNILVERGRLELPGP 139
SE FLWA+L +ND+ R + GR P P
Sbjct: 459 SECIKFLWAALAQFTNDERSRFLRFVTGRRRPPAP 493
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVY 382
PSP +T YPS +LGN T + V+
Sbjct: 85 PSPNITSYPSLMTLKLGNFTTATSVVF 111
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVY 382
PSP +T YPS ELGN + + V+
Sbjct: 274 PSPNITSYPSLMTLELGNFTSATSVVF 300
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 412
PSP +T YPS + +GN + + V+ RL
Sbjct: 843 PSPNITSYPSLTTSAVGNFTSATSVVFDSTTPNATRL 879
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 412
PSP +T YPS + +GN + + V+ RL
Sbjct: 1044 PSPNITSYPSLMKSAVGNFTSATSVVFDSTTPNATRL 1080
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 412
PSP +T YPS + +GN + + V+ RL
Sbjct: 1446 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATRL 1482
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 412
PSP +T YPS + +GN + + V+ RL
Sbjct: 1848 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATRL 1884
>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
Length = 651
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVY 382
PSP +T YPS LGN T + V+
Sbjct: 319 PSPNITSYPSLMTLALGNFTTATSVVF 345
>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 473
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVY 382
PSP + YPS ELGN T + V+
Sbjct: 4 PSPNIKSYPSLMTLELGNFTTATSVVF 30
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVY 382
PSP + YPS ELGN T + V+
Sbjct: 382 PSPNIKSYPSLMTLELGNFTTATSVVF 408
>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 307 PEINALPELRRQRIRQLSNRTDYCIQGQSRP 399
PE++A PE +RQ RQLS + Q P
Sbjct: 325 PEVDATPEFKRQFSRQLSISRQFSRQDSITP 355
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 302 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 412
PSP +T YPS + +GN + + V+ RL
Sbjct: 150 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATRL 186
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = +2
Query: 305 SPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL-----WVLDVGTYGYDNVTNVCP 466
+PK + P+ EGN G C + T V+ ++C R W Y D CP
Sbjct: 233 NPKTSCMPTHEGNSNGACCSFPFTYKGVEQNRCIRTERNFRWCATTNNYDNDKDWGFCP 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,811,692
Number of Sequences: 59808
Number of extensions: 402773
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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