Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0567
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5Z5H7 Cluster: Putative uncharacterized protein OSJNBa...    26   6.3  
UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ss...    33   6.6  
UniRef50_Q5K8K8 Cluster: Mitochondrion protein, putative; n=2; F...    33   8.7  

>UniRef50_Q5Z5H7 Cluster: Putative uncharacterized protein
           OSJNBa0031J07.30; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0031J07.30 - Oryza sativa subsp. japonica (Rice)
          Length = 143

 Score = 26.2 bits (55), Expect(2) = 6.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 556 GKSHLCSIICLHLLGVVRLSLKSQPKCQCELSPSK 660
           G+S  CS  C     V R    S P C CE  PS+
Sbjct: 107 GRSRACSTSC----AVARGHASSHPSCGCEDLPSR 137



 Score = 25.8 bits (54), Expect(2) = 6.3
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = +1

Query: 340 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQERLY 519
           H  +    ++ H  +   C+       I D  C   + IK  E+ ++  PTC      +Y
Sbjct: 12  HGLLLHLFASKHPSVSVACLTIAGTMRISDSTC---KQIKQQENDLVSKPTC------IY 62

Query: 520 VNITLH 537
           ++I +H
Sbjct: 63  IDIRMH 68


>UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ssRNA
           positive-strand viruses, no DNA stage|Rep: Long-distance
           movement protein - Pea enation mosaic virus (PEMV)
          Length = 236

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 303 TRERAG-R*PAGLPRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSRR 470
           +RER G   P+  P+      L T +   +  H GT FR+   S+V+ S   +R+RR
Sbjct: 49  SRERKGYTHPSPTPKNSRQGQLRTEAVQEHPKHGGTAFRRESGSSVHPSRPRRRARR 105


>UniRef50_Q5K8K8 Cluster: Mitochondrion protein, putative; n=2;
           Filobasidiella neoformans|Rep: Mitochondrion protein,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 725

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 540 PALKKGQESPLQYYLPPPAWCRK-----TVTEVTAKMPMRIVSVQGLELEE 677
           P L  G E P  YYLPPP   +K      V E+  ++P+ +  V+    EE
Sbjct: 310 PPLPLGHEPPPGYYLPPPPSTKKEKVEEKVEEIKERLPLLVPKVKEFASEE 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,839,903
Number of Sequences: 1657284
Number of extensions: 14804238
Number of successful extensions: 33815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33809
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)