Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0567
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   0.63 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   7.8  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 987

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 609  SYDTKQVEADNTAKVTLALSSELEMQRNIDVQPLLFYRTRWHTYD 475
            S++ +   AD  A V    SS  EMQ N D+Q  + +R R+   D
Sbjct: 927  SFNKRHRLADVVADVCRFQSSSYEMQSNTDLQSYILHRCRFVNQD 971


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 583 CLHLLGVVRLSLKSQPKCQCELSPS 657
           CL +  VV+L LKS    QC L PS
Sbjct: 690 CLTISIVVQLDLKSGAVLQCSLGPS 714


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 370  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGM 486
            L+ LI  + I +HN  N    L  ++ + K H   ++G+
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGL 2418


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 457 LCPGD*YTADQQCFLNCV 404
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 343 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 435
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,713
Number of Sequences: 5004
Number of extensions: 63741
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)