Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0567
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0231 - 1730428-1730817                                           29   3.5  
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136...    29   4.6  
10_08_0496 - 18328875-18328907,18329056-18329106,18329562-183296...    29   4.6  

>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 319 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 462
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


>12_02_0390 -
           18510095-18510148,18510318-18512450,18513018-18513681,
           18514089-18514202,18514835-18514979,18515274-18515331
          Length = 1055

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 484 MPTCSIEQERLYVNITLHFQL*RKGKSHLCSIICLHLLGVVRLSLKSQPKCQCEL 648
           +P  S EQ +L V I     L +   + LCS I L  L + R  LK+ P   C L
Sbjct: 630 LPAISGEQTKLTVLILQDNHLSQSSVTGLCSFISLQYLDLSRNWLKTFPTEVCNL 684


>10_08_0496 -
           18328875-18328907,18329056-18329106,18329562-18329690,
           18330491-18330524,18331252-18331280,18331801-18332945,
           18333003-18333353,18334617-18334893
          Length = 682

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 604 VRLSLKSQPKCQCELSPSKDWS 669
           V L L  QPKC CEL P   WS
Sbjct: 605 VNLKLIKQPKCTCELGPK--WS 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,768
Number of Sequences: 37544
Number of extensions: 414278
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)