Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0567
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               31   1.2  
SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)                     28   8.2  

>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = +1

Query: 340 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE--- 504
           H+K    HSTL   +  VC     L ++ D  C +  D++ H +S   +   TC+++   
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQGCA 310

Query: 505 -QERLYVNITLHFQL*RKGKSHLCSIICLHLLG 600
              R    +  HF++  +G   L    C HL G
Sbjct: 311 FSARAMQTLKRHFKITHEG-GELAKYEC-HLCG 341


>SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/88 (29%), Positives = 33/88 (37%)
 Frame = +2

Query: 56  RYSLLASDNAIAKILRVKRCIISRIETLANNRPKI*ACISNEGQTKDRFIHTAHGDSKMD 235
           R SLL  D  I K +  K  IIS + TL  +R     C         +  H       + 
Sbjct: 107 RSSLLPEDRIIGKHVSDKIDIISELLTLGADR----ICY--------KICHKLGDSDLIR 154

Query: 236 SRDLCARWCLITTDTIKGRMRKHKRESR 319
              +C RW     D +  R R H RE R
Sbjct: 155 FASVCQRWRQFVEDFLSDRWRSHLRERR 182


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 183  DKQRIDLYTRPTAIVKWTHEIYVRDGV**RQTLSRAGCVNTRERAGR*PAGLP-RQDHFN 359
            DKQ+   YT P+   K      +RD +  R+ +S +   +T E +GR   G P R+   +
Sbjct: 2625 DKQQA--YTPPSESSKAPRSPQIRDAITPREPVSASDRTSTSEPSGRTSVGAPARERDPS 2682

Query: 360  TLHTSSSD 383
             +   SSD
Sbjct: 2683 VIDVYSSD 2690


>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +1

Query: 319 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTS-LQDIKDHEDSVIGMPTC 495
           G  LR   V+      T  +++P +   +      + +L    L +I DHE  +   P C
Sbjct: 115 GHGLRPVDVEFMKALHTKVNIVPVIAKSDSLTKTEISRLKRKVLDEIADHEIKIYSFPEC 174

Query: 496 SIEQERLYVNI 528
             E +  ++ I
Sbjct: 175 DSEDDEEFLAI 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,353,323
Number of Sequences: 59808
Number of extensions: 509729
Number of successful extensions: 1136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)