BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0567 (690 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 3.8 At2g09865.1 68415.m01022 hypothetical protein 28 5.1 At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta... 28 6.7 At2g32560.1 68415.m03977 F-box family protein contains Pfam PF00... 28 6.7 At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 8.9 At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 27 8.9 At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 27 8.9 >At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 481 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 525 YYAAFPALKKGQESPLQYYLPPPA 596 Y +P Q SP+Q+Y PPPA Sbjct: 404 YQQQYPPNHHHQPSPMQHYAPPPA 427 >At2g09865.1 68415.m01022 hypothetical protein Length = 339 Score = 28.3 bits (60), Expect = 5.1 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 276 TLSRAGCVNTRERAGR*PAGLPRQDH 353 TLSR GCV + R R PA R +H Sbjct: 312 TLSRCGCVASTRRRHRSPAPTSRSEH 337 >At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, putative / FTA, putative / protein farnesyltransferase, putative similar to farnesyltransferase alpha subunit [GI:2246442][Pisum sativum] Length = 326 Score = 27.9 bits (59), Expect = 6.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 370 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV 477 L+ L T C L ++D LC L+ +H+DSV Sbjct: 248 LNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSV 283 >At2g32560.1 68415.m03977 F-box family protein contains Pfam PF00646: F-box domain; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 371 Score = 27.9 bits (59), Expect = 6.7 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%) Frame = -2 Query: 668 LQSLDGDNSHWHFGCDFSDSL-------TTPSRWRQIILQR 567 L+S DGD++H H C S+++ T SRWR+ ++ R Sbjct: 295 LESCDGDHNHCH--CHLSETVVLEFNQYTVGSRWRRTMIMR 333 >At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT) family protein low similarity to Swift [Xenopus laevis] GI:14164561; contains Pfam profiles PF00583: acetyltransferase, GNAT family, PF00533: BRCA1 C Terminus (BRCT) domain Length = 991 Score = 27.5 bits (58), Expect = 8.9 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = -1 Query: 255 LAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTLNIFAIALS 76 L K+R + LL + +C+ + P A I A +++ +++ F IALS Sbjct: 436 LRAKARPNSLLKGYDICVGPNIELPIKTSSAIIKS---AGGNVISGVNKGKAKTFRIALS 492 Query: 75 LASNE*RTSC 46 LA R SC Sbjct: 493 LAHGSVRVSC 502 >At1g76930.2 68414.m08956 proline-rich extensin-like family protein contains extensin-like region, Pfam:PF04554 Length = 256 Score = 27.5 bits (58), Expect = 8.9 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 486 ANVFYRTREAVRQYYAAFPALKKGQESPLQYYLPPPAW 599 AN FY + ++Y+ P + K P+++Y PPP + Sbjct: 23 ANYFYSSPPPPVKHYSP-PPVYKSPPPPVKHYSPPPVY 59 >At1g76930.1 68414.m08955 proline-rich extensin-like family protein contains extensin-like region, Pfam:PF04554 Length = 293 Score = 27.5 bits (58), Expect = 8.9 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 486 ANVFYRTREAVRQYYAAFPALKKGQESPLQYYLPPPAW 599 AN FY + ++Y+ P + K P+++Y PPP + Sbjct: 23 ANYFYSSPPPPVKHYSP-PPVYKSPPPPVKHYSPPPVY 59 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,915,226 Number of Sequences: 28952 Number of extensions: 338846 Number of successful extensions: 795 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 795 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1467502800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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