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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0567
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    29   3.8  
At2g09865.1 68415.m01022 hypothetical protein                          28   5.1  
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    28   6.7  
At2g32560.1 68415.m03977 F-box family protein contains Pfam PF00...    28   6.7  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   8.9  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    27   8.9  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    27   8.9  

>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 525 YYAAFPALKKGQESPLQYYLPPPA 596
           Y   +P     Q SP+Q+Y PPPA
Sbjct: 404 YQQQYPPNHHHQPSPMQHYAPPPA 427


>At2g09865.1 68415.m01022 hypothetical protein
          Length = 339

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 276 TLSRAGCVNTRERAGR*PAGLPRQDH 353
           TLSR GCV +  R  R PA   R +H
Sbjct: 312 TLSRCGCVASTRRRHRSPAPTSRSEH 337


>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 370 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV 477
           L+ L  T C     L  ++D LC  L+   +H+DSV
Sbjct: 248 LNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSV 283


>At2g32560.1 68415.m03977 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 371

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 668 LQSLDGDNSHWHFGCDFSDSL-------TTPSRWRQIILQR 567
           L+S DGD++H H  C  S+++       T  SRWR+ ++ R
Sbjct: 295 LESCDGDHNHCH--CHLSETVVLEFNQYTVGSRWRRTMIMR 333


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 255 LAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTLNIFAIALS 76
           L  K+R + LL  + +C+  +   P     A I     A  +++  +++     F IALS
Sbjct: 436 LRAKARPNSLLKGYDICVGPNIELPIKTSSAIIKS---AGGNVISGVNKGKAKTFRIALS 492

Query: 75  LASNE*RTSC 46
           LA    R SC
Sbjct: 493 LAHGSVRVSC 502


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 486 ANVFYRTREAVRQYYAAFPALKKGQESPLQYYLPPPAW 599
           AN FY +     ++Y+  P + K    P+++Y PPP +
Sbjct: 23  ANYFYSSPPPPVKHYSP-PPVYKSPPPPVKHYSPPPVY 59


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 486 ANVFYRTREAVRQYYAAFPALKKGQESPLQYYLPPPAW 599
           AN FY +     ++Y+  P + K    P+++Y PPP +
Sbjct: 23  ANYFYSSPPPPVKHYSP-PPVYKSPPPPVKHYSPPPVY 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,915,226
Number of Sequences: 28952
Number of extensions: 338846
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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