Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0566
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    59   5e-10
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    40   3e-04
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   2.2  
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   6.8  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   9.0  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  VTGQITARLNTAE--EQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTN--FPVNVEG 190
           +   +TA++   +     L +P GL   E+TASSL+KVD  G ++  G T   F +N  G
Sbjct: 98  ILNHLTAKVEEPDGTASFLINPYGLRYGEITASSLIKVDEDGNIKHPGVTGDVFGINRAG 157

Query: 191 FSVHASVHAARPDLRCVVHVRGP 259
           + +H+++H ARPD++ ++H   P
Sbjct: 158 YVIHSAIHRARPDVKSIMHNHYP 180


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +2

Query: 20  GVTGQITARLNTAEEQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTNFPVNVEGFSV 199
           G  G +T R    E     +P  +    +  S LV ++  G +   G +    N  GF++
Sbjct: 39  GTAGHVTVRDPIDENTFWINPLEVPFSLMKPSDLVHINSDGEII--GGSKMKYNTSGFAI 96

Query: 200 HASVHAARPDLRCVVHV 250
           H  +H  RP++ CV HV
Sbjct: 97  HYEMHKVRPEVICVCHV 113


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +2

Query: 20  GVTGQITARLNTAEEQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTNFPVNVEGFSV 199
           GVT  +TAR+++  +  +         E++ +S  + ++ G++QD+       N    S 
Sbjct: 79  GVTNNVTARISSKRKINMVDEAN--DTEISKTSQFEDNVMGMLQDENVQVLNTNTITISE 136

Query: 200 HASVHAAR 223
            +  HA++
Sbjct: 137 ESEFHASK 144


>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 113 SSLVKVDMQGVVQDQGTTNFPVNVEGFSVHASVHAARPDLRCVVHVRGP 259
           ++L + +  G+   +G   FPVN   FS   + +  R +L+  V + GP
Sbjct: 26  NALRETESHGMPPLRGPAGFPVNPRPFSHGGNANLDRLNLKEPVDLEGP 74


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 256 PSALAVSATRRGVLPLCQEAALLGEVAYHTLPYGVL 363
           P    +S + R +L      A LGE  Y    YGV+
Sbjct: 326 PVTYMISVSARSILQTLLAVAFLGETLYGNRIYGVI 361


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 252 RTCTTQRRSGRAACTDACTEKPSTLTGKLVVPWSW 148
           R C  Q  + R A  D CT  PS  TG++ +  +W
Sbjct: 26  RQCIYQILTDRFALDDHCTTAPS--TGRMYLGGTW 58


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 349 PYGVLDNAERDKLVRALGPHAKVVVLSGAGALCCGATLEEAFL 477
           P GVL N E  +++  L P+    +LS   ALC  A  + A L
Sbjct: 150 PSGVLANDEVYRVLAQLAPNEIDYMLSAIKALCLEAPEQAAQL 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,531
Number of Sequences: 5004
Number of extensions: 33161
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)