Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0566
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 32 0.43
02_01_0305 + 2041370-2043114,2043764-2044121 31 0.75
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716... 31 1.00
05_05_0323 - 24098962-24099866,24099941-24100442 31 1.00
02_05_0324 + 27941007-27941322,27941818-27942164 30 1.7
09_06_0083 + 20753191-20754480 29 3.0
06_01_0711 + 5154232-5154942,5155597-5156010 29 4.0
04_04_0680 - 27217563-27220088 29 4.0
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 4.0
12_02_0742 - 22696478-22696984 28 5.3
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 28 5.3
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 7.0
07_03_1032 + 23390622-23390960 28 7.0
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615... 28 7.0
11_01_0250 + 1924261-1924848 27 9.3
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 9.3
05_04_0454 + 21383068-21384525 27 9.3
04_04_1351 - 32827136-32827984 27 9.3
01_05_0488 - 22647196-22647561,22647847-22647999,22648716-226496... 27 9.3
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 326 PRRAASWHRGRTP--RRVADTARAEGHARAPRSAG 228
PR A W RGR RR A AEG A+A RS G
Sbjct: 43 PRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLG 77
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -2
Query: 506 SVAAVSRRACRKASSSVAPQHSAPAPLSTTTLA 408
++AA + R ASSS A +H+A AP S TLA
Sbjct: 29 TLAAAAARHAAAASSSSAARHAAAAPSSAATLA 61
>09_04_0503 -
18170645-18170858,18171029-18171222,18171419-18171629,
18172162-18172553,18172926-18173054,18173353-18173487,
18173885-18174088,18174716-18174771,18174793-18174950,
18175864-18176231
Length = 686
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 512 LPSVAAVSRRACRKASSSVAPQHSAPAPL 426
LP+V + +CR+ + PQH +PAPL
Sbjct: 8 LPAVLRLFSTSCRRGHPTQPPQHPSPAPL 36
>05_05_0323 - 24098962-24099866,24099941-24100442
Length = 468
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 168 LVVPWSWTTPCMSTLTRDEAVTSWGSRPRGDVSTCSSAVFRRAVICPVTPVVV 10
L +P ++ P ++ L DE +G R GD CS V R + V ++V
Sbjct: 365 LTLPIAFDQPIVARLVADEWRIGYGLRENGDGGGCSGVVGREEIAAAVRRLMV 417
>02_05_0324 + 27941007-27941322,27941818-27942164
Length = 220
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 223 SGPALRGARAWPSALAVSATRRG 291
SGP LRG R WP + T+RG
Sbjct: 37 SGPKLRGLRIWPQYHLIYRTKRG 59
>09_06_0083 + 20753191-20754480
Length = 429
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +1
Query: 244 ARAWPSALAVSA---TRRGVLPLCQEAALLGEVAYHTLPYGVLDNAERDKLVRALGPHAK 414
A A P ALA SA G LP+ + G H + G E R G HA
Sbjct: 352 AAAVPDALAPSAGHGAAAGGLPIGGQGQQQGAFGQHQVLNGAGQPLEDSSGERPRGAHAA 411
Query: 415 VVVLSGAGAL 444
VVV SG +L
Sbjct: 412 VVVTSGLVSL 421
>06_01_0711 + 5154232-5154942,5155597-5156010
Length = 374
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/81 (32%), Positives = 34/81 (41%)
Frame = +1
Query: 220 PSGPALRGARAWPSALAVSATRRGVLPLCQEAALLGEVAYHTLPYGVLDNAERDKLVRAL 399
P+ GA A P+A A + L + A L VA L G+LD + R L
Sbjct: 132 PNAHGGAGAGATPAATATERGIKPTLSVSLAAICLVLVAPWRLAVGILDAPSQ----RLL 187
Query: 400 GPHAKVVVLSGAGALCCGATL 462
P A V V+ A A G T+
Sbjct: 188 APLATVPVVGVAAATVVGTTI 208
>04_04_0680 - 27217563-27220088
Length = 841
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -1
Query: 294 DAAPR---GGHGESGGPRTCTTQRRSGRAACTDACTEKPSTLTGKLVVPWSWTTPCMSTL 124
D AP+ G +GG C +S AC ++ + K+V+PW + +
Sbjct: 191 DCAPKVKKGNDSGNGGADECNAAAKSSNLACPGNNGDETNRKGRKVVLPWRFQVGFKRSF 250
Query: 123 TRDEAVTSWGSRPRG 79
++ S S P G
Sbjct: 251 SKAFCSDSESSGPSG 265
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 186 STLTGKLVVPWSWTTPCMSTLTRDEAVTSWGSRPRGDVSTCSSAVFRRAVICP 28
STL G V S P + LT + VT+W +P +T S+ A +CP
Sbjct: 1658 STLPGSQTVETSQQPPAEAKLTENLGVTAWDVQPEMQTTT-STLDSPSARMCP 1709
>12_02_0742 - 22696478-22696984
Length = 168
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 485 RACRKASSSVAPQHSAPAPLSTTTLACG 402
RA R+ VA H P P +T T CG
Sbjct: 30 RAARRRGQQVAAAHLLPHPPTTATTGCG 57
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2
Query: 347 RVWYATSPRRAASWHRGRTPRRVADTARAEGHARAPRSAGPD 222
R W S R A+ R RR ++ A GH RAP SA D
Sbjct: 8 RGWAPLSTRACAARPRPPMDRR-SEAAERRGHGRAPYSAARD 48
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 621 ATCSRRGRLAGTPRTSVSAFSHLAG*GHPTAWL-LTSVAVGGGGEQ 487
+TC + + G +SV+ LA P AW + VGGG Q
Sbjct: 102 STCGKSSKQRGRNNSSVTPVFSLAARSGPNAWCGVAQAPVGGGCRQ 147
>07_03_1032 + 23390622-23390960
Length = 112
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 630 GPRATCSRRGRLAGTPRTSVSAFSHLAG*GHPTAWLLTSV 511
G C G LA TPRT V L G G AW+ +++
Sbjct: 4 GSTGGCLPMG-LATTPRTDVGRGQDLGGGGRRAAWICSAI 42
>05_04_0247 +
19358929-19359187,19360439-19360639,19361426-19361592,
19361819-19362089,19362550-19362818
Length = 388
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 403 PHAKVVVLSGAGALCCGATLEE 468
PHA V+L A ALC G EE
Sbjct: 5 PHAAAVLLVAAAALCLGGRAEE 26
>11_01_0250 + 1924261-1924848
Length = 195
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 2 FGWTTTGVTGQITARLNTAEEQVLTSPRGLLPHEVTASS 118
FG TT+ + + A +++++ T+PR +LP ASS
Sbjct: 35 FGSTTSSSSSSLAA--SSSDDSAATTPRSVLPASAAASS 71
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 213 CTDACTEKPSTLT-GKLVVPWSWTTPCMSTLTRDEAVT 103
C A + L+ G VVPW WT+P MS R VT
Sbjct: 1214 CASAVRAAAAALSEGDTVVPWQWTSP-MSPAPRWLLVT 1250
>05_04_0454 + 21383068-21384525
Length = 485
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 291 AAPRGGHGESGGPRTCTTQRRSGRAACT--DACTEKPSTLTG 172
AA GGHG + PRT TT R T A + + S+ TG
Sbjct: 150 AADDGGHGVTTSPRTTTTSLPDSRGMKTLSPAFSARSSSETG 191
>04_04_1351 - 32827136-32827984
Length = 282
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 279 GGHGESG-GPRTCTTQRRSGRAACTDACTEKPSTLT 175
GG G G P +R GR AC + T PST T
Sbjct: 161 GGSGGGGYSPSPSPPKRHGGRKACPPSPTPTPSTPT 196
>01_05_0488 -
22647196-22647561,22647847-22647999,22648716-22649663,
22649783-22649830
Length = 504
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 120 WSRWTCRASSRTRAPPTFRSTSKVSPCTRPCTRPVR 227
WS T A R A P R S V+ CTR ++ R
Sbjct: 275 WSSTTTTAPLRLAAAPCLREISLVNSCTRRSSQRFR 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,474
Number of Sequences: 37544
Number of extensions: 354370
Number of successful extensions: 1867
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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