Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0566
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27) 93 2e-19
SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12) 58 4e-09
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17) 29 3.1
SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_26753| Best HMM Match : BTK (HMM E-Value=3.9) 28 7.2
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 27 9.5
>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
Length = 468
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/86 (51%), Positives = 59/86 (68%)
Frame = +2
Query: 2 FGWTTTGVTGQITARLNTAEEQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTNFPVN 181
FGW+ G+ G ITAR + E+ L +P GLL +EVTASSLVKVD G + D G+TN VN
Sbjct: 133 FGWSI-GIYGHITARASNDEDHYLLNPFGLLYNEVTASSLVKVDFAGNIVDGGSTNLGVN 191
Query: 182 VEGFSVHASVHAARPDLRCVVHVRGP 259
G +H++VH+AR D+ CV+H+ P
Sbjct: 192 RAGLVLHSAVHSARKDIACVIHIHQP 217
>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
Length = 716
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 FGWTTTGVTGQI-TARLNTAEEQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTNFPV 178
F W T + + TAR + LT P GLL EV+A L K+D +G ++G TN V
Sbjct: 453 FNWLTDMESNVLCTARATDDDYYYLTPPLGLLAGEVSAGCLYKMDQEGNTIEEGNTNLTV 512
Query: 179 NVEGFSVHASVHAARPDLRCVV 244
N +H+ V+ + D+ CVV
Sbjct: 513 NKIALEIHSQVYGCKSDVNCVV 534
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 VLPLCQ-EAALLGEVAYHTLPYGVLDNAERDKLVRALGPHAKVVVLSGAGALCCGATLEE 468
V+ LC +GE+ YHTL VLD AE++ L L KV+VL GA+C G ++EE
Sbjct: 533 VVVLCSTNVKAIGEIVYHTLGSIVLDKAEKEALTLKLSAVDKVLVLRNMGAVCVGKSVEE 592
Query: 469 AFLHARLLTAATD 507
AF +A LL A +
Sbjct: 593 AFYNAFLLHKACE 605
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 26 TGQITARLNTAEEQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTNFPVNVEGFS 196
T T + + + +V P + + + V ++ VV+D GT N PV+ GF+
Sbjct: 3711 TEYFTVVVKSTDPRVTVDPDTATVNIIDNDATVSIESVTVVEDAGTANVPVHRSGFT 3767
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 300 GQDAAPRGGHGESGGPRTCTTQRRSGRAACTDACTEKPSTLTGKLVVPWS 151
G + APR HG + P T + CTD T P + + P S
Sbjct: 1123 GTNTAPRSTHGTTAAPN--ITNGTTAEPICTDGTTTTPMSTDEAIAAPMS 1170
>SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 332 TSPRRAASWHRGRTPRRVADTARAEGHARAPRSAGPDGP 216
TSP + G PRR D +A+G+ RS P GP
Sbjct: 602 TSPVGGVEYSSGGLPRRHKDHKKAKGNRNVQRSPRPLGP 640
>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
Length = 280
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 197 VHASVHAARPDLRCVVHVRGPPLS 268
+H VH ARPD C H+ PP S
Sbjct: 122 IHLGVHKARPDAICAFHLH-PPYS 144
>SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 129 WTCRASSRTRAPPTFRSTSKVSPCTRPCTRPVRTCAAW 242
W+ + S AP +RS V+ T TRP C AW
Sbjct: 67 WSPESLSIISAPGPYRSKCLVTIATILNTRPASACQAW 104
>SB_26753| Best HMM Match : BTK (HMM E-Value=3.9)
Length = 194
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 165 PTFRSTSKVSPCTRPCTRPVRTCAA 239
P + S +S TRPC RP+ CA+
Sbjct: 77 PVYTSNFFLSSKTRPCRRPLSLCAS 101
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 373 ERDKLVRALGPHAKVVVLSGAGALCCGATLEEAFL 477
E +L+R + K V S +G LCC +T E F+
Sbjct: 350 ESTELIRRIEIQPKTVFWSDSGELCCISTEESYFI 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,240
Number of Sequences: 59808
Number of extensions: 336955
Number of successful extensions: 1399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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