Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0566
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20585.2 68415.m02406 expressed protein                             29   1.9  
At2g20585.1 68415.m02405 expressed protein                             29   1.9  
At1g57770.1 68414.m06554 amine oxidase family contains similarit...    29   1.9  
At3g57560.1 68416.m06409 aspartate/glutamate/uridylate kinase fa...    29   3.4  
At1g78990.1 68414.m09210 transferase family protein low similari...    29   3.4  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    28   5.9  
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr...    28   5.9  

>At2g20585.2 68415.m02406 expressed protein
          Length = 100

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 141 ASSRTRAPPTFRSTSKVSPCTRPCTRPV 224
           AS    APP FR+T++ SP   P   PV
Sbjct: 30  ASQAKSAPPLFRATARRSPLLSPLRNPV 57


>At2g20585.1 68415.m02405 expressed protein
          Length = 100

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 141 ASSRTRAPPTFRSTSKVSPCTRPCTRPV 224
           AS    APP FR+T++ SP   P   PV
Sbjct: 30  ASQAKSAPPLFRATARRSPLLSPLRNPV 57


>At1g57770.1 68414.m06554 amine oxidase family contains similarity
           to carotenoid isomerase [Lycopersicon esculentum]
           GI:19550437, phytoene dehydrogenase (PDH1) GI:433144
           from (Cercospora nicotianae); contains Pfam profile
           PF01593 amine oxidase, flavin-containing
          Length = 574

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 403 PHAKVVVL-SGAGALCCGATL 462
           P A VVV+ SG G LCCGA L
Sbjct: 51  PEADVVVIGSGIGGLCCGALL 71


>At3g57560.1 68416.m06409 aspartate/glutamate/uridylate kinase
           family protein similar to acetylglutamate kinase from
           Porphyra purpurea [SP|P31595], Campylobacter jejuni
           [GI:6650364] contains Pfam profile PF00696: Amino acid
           kinase family
          Length = 347

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 23  VTGQITARLNTAEEQVLTSPRGLLPHEVTASSLVK-VDMQGV 145
           V G++ A L   +  +LT   G+L ++   SSL+K +D++GV
Sbjct: 248 VAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGV 289


>At1g78990.1 68414.m09210 transferase family protein low similarity
           to acetyl CoA: benzylalcohol acetyltransferase Clarkia
           breweri GI:3170250, GI:6166336, Clarkia concinna
           GI:6166326, anthranilate
           N-hydroxycinnamoyl/benzoyltransferase Dianthus
           caryophyllus GI:2239091; contains Pfam profile PF02458
           transferase family
          Length = 455

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -1

Query: 174 GKLVVPWSWTTPCMSTLTRDEAVTSWGSRPRGDVSTCSSAVFRRAVICPVTPVVVQPN 1
           G +VV  ++        + +  + SW    R DV       FRR+++ P  P+V+ P+
Sbjct: 147 GSIVVGCTFDHRVADAYSMNMFLLSWAEISRSDVPISCVPSFRRSLLNPRRPLVMDPS 204


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 470 PSCTRVCSPPPPTATEVSSHAVG*PHPAR*LNAETDVRGVPASRP 604
           P+ T   SPPPP AT  S  +     P+      T +  VP  +P
Sbjct: 163 PTPTTTTSPPPPPATSASPPSSNPTDPSTLAPPPTPLPVVPREKP 207


>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 478

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -1

Query: 198 TEKPSTLTGKLVV---PWSWTTPCMSTLTRDEAVTSWGSRPRGDVSTCSSAVFRRAVICP 28
           T+KPS+   KL+    P    +   +   +++ +TSW   P  D   CS  +F  A    
Sbjct: 58  TKKPSSSPPKLLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPLRDDDFCSDLLFSAAPTAT 117

Query: 27  VTPVVVQ 7
            T  V Q
Sbjct: 118 ATATVSQ 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,629
Number of Sequences: 28952
Number of extensions: 214739
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)