Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0564
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)                     28   4.9  

>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
          Length = 1087

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 429 HL*RKCVTHLELRVLRSQYSYNGCPTFKPKRITVSRQK*ARADSQEVLPPKS 584
           +L RKCV H++ R    QY++ G     P  IT++      A       P+S
Sbjct: 194 NLFRKCVNHVQKRASSLQYAHWGPAPDLPSSITLTISPQKTATKPSTFQPQS 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,455
Number of Sequences: 59808
Number of extensions: 257123
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)