Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0564
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70270-8|CAA94229.2|  358|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine r...    29   3.2  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z70270-8|CAA94229.2|  358|Caenorhabditis elegans Hypothetical
           protein C53D6.7 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 395 NEKKTKSSRFVCLLTLIGVKSLIRNNC 315
           N KK K+ RF+C +TL   +S+ R NC
Sbjct: 71  NYKKFKTPRFLCEITLFAERSIWRYNC 97


>AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine
           receptor, class z protein83 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +2

Query: 11  HTLDKMVKNKINVMDAIFKTCFSMFHLQHS-YLTNGFI---DHILNFFPKCSLRPKEVRF 178
           H + ++V  +  ++   +  CF+M+HL  + YLT  F+     ++ +FPK     K+V  
Sbjct: 85  HVIHEIVIIRFLIVVIFYALCFTMYHLTKAFYLTTFFLAFQQFLVFYFPKLE---KQVSI 141

Query: 179 SQK 187
            QK
Sbjct: 142 IQK 144


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 422 GSISYEKLSNEKKTKSSRFVCLLTLIGVKSLI 327
           G+I Y+++   K+  + RF C LT+IG+  L+
Sbjct: 26  GTIRYDEVDETKRWFNRRF-CFLTVIGIAVLL 56


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 422 GSISYEKLSNEKKTKSSRFVCLLTLIGVKSLI 327
           G+I Y+++   K+  + RF C LT+IG+  L+
Sbjct: 31  GTIRYDEVDETKRWFNRRF-CFLTVIGIAVLL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,828,485
Number of Sequences: 27780
Number of extensions: 208034
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)