Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0563
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   1.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   4.5  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.8  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 159 QSDGIRHEQEGFLNNFGQENENLSVKGSYSW 251
           +S GI  +  GF  NF  E  N    G+++W
Sbjct: 2   KSSGIAGDSNGFETNFLNETTNREEDGAFNW 32


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -1

Query: 355 DLWRNATTGSLRNIWFETIFA------SCIVYLISYSIRSSHE*LPFTDRFSFS*PKLLR 194
           D+  N ++G +  IW + IFA      S  V L+S+   SS       D+F       L+
Sbjct: 408 DVPTNMSSGDISEIWLQHIFAHNTSIESIQVALLSFQNSSSQVSKNKLDKFGALTISELK 467

Query: 193 NPSCSCLIPSDCLKPN 146
           N   S ++ +  ++PN
Sbjct: 468 NAVLSSIVSTIQIEPN 483


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 313 RYFSGTRWWHSATNPGFYGW 372
           RYFSG  W H   +P  Y W
Sbjct: 167 RYFSGFFWRHPLLDPYKYYW 186


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 282 TIQLAKMVSNQIFLRDPVVAFRHKSWVLWLVNML 383
           TI  +  + + I +RD V  + + +  LW+V+M+
Sbjct: 385 TIITSSTLEHAISIRDSVAKYLYSALFLWIVHMI 418


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 58  LLLPKFRPSILTKTLVYFTK--ITKINLE-ATNLVSDNPMVSDMS 183
           L  PKF  S+L   + +F+K  IT+ N    T LV+  P+ +D S
Sbjct: 347 LFSPKFPKSLLQYVITFFSKPNITEENYNLLTLLVTHIPITTDSS 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,778
Number of Sequences: 5004
Number of extensions: 61746
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)