Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0563
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535...    29   3.5  
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762...    29   4.7  
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844...    28   6.2  
01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150...    28   6.2  

>10_06_0182 -
           11552540-11552606,11552692-11552787,11553458-11553528,
           11553660-11553764,11554149-11554239,11554331-11554381,
           11554478-11554566,11554667-11554909,11555027-11555190,
           11555883-11555988,11556075-11556242,11557456-11557494,
           11557582-11557713
          Length = 473

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 377 HAIPRAHNLLYINEYIIT*IPGRELNCQRCNDCERTYSNGS 499
           H+ PR   L  I     T IPGRE+  Q   + E+ YS+GS
Sbjct: 381 HSRPRGSQLGAIVSKQSTIIPGREVLQQAYKELEQKYSDGS 421


>06_01_0982 +
           7627420-7628141,7628190-7628643,7629167-7629823,
           7629975-7630469
          Length = 775

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -1

Query: 406 QQIVSTWNSMLTSHRTQDLWRNATTGSLRNIWFETIFASCIVYLISYSIRS 254
           Q+  + W++MLT++  QD         +R  W    F  C    +  + RS
Sbjct: 423 QEFDAKWDAMLTTYHLQDNEHFRHLWEMRQCWVPVYFMHCFFPFLQTTARS 473


>04_04_0020 +
           22182649-22182829,22183900-22183999,22184415-22184491,
           22184718-22184809,22188655-22189767
          Length = 520

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 436 DLCNNIFIYIQQIVSTWNSMLTSHRTQDLWRNATTGSLRNIWFETIFA 293
           D+CNN++   QQ  ++ N        +D W    T +L + W E   A
Sbjct: 142 DICNNLWKMKQQHAASPNPGGGGGGREDAWSEGATAALIDAWGERFVA 189


>01_06_1834 +
           40214378-40214563,40214728-40214818,40215006-40215093,
           40215444-40215695,40215927-40216101,40216243-40216329,
           40216445-40216513,40216638-40216734,40217010-40217092,
           40217373-40217480,40217672-40217793,40217921-40218028,
           40218121-40218194,40218492-40218617,40219655-40219722,
           40219930-40220079,40220164-40220214,40220678-40220734,
           40220824-40220970,40221064-40221155,40221516-40221625,
           40221728-40221791,40221883-40222032,40222554-40222788
          Length = 929

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 280 RLYSWRRWF---QTRYFSGTRWWH 342
           RL SW +WF   QT  + GT +WH
Sbjct: 542 RLNSWFQWFNSTQTGKYEGTFYWH 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,316
Number of Sequences: 37544
Number of extensions: 360452
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)