Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0563
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    28   0.097
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   8.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 69  QIPTFDSNQNARILYQNYENKF-GSYKFGFRQSDGIRHEQEGFLNNFGQENENLSVKGSY 245
           Q P+  ++++A I  Q  E  F G+Y   F  S+GI H++ G       E   +S +GS 
Sbjct: 17  QRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSD 75

Query: 246 SW 251
           S+
Sbjct: 76  SY 77



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 PDGVTYEIDYTAGEDGFK 310
           PDG    I Y A E+GF+
Sbjct: 80  PDGQQVSITYVADENGFQ 97


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 350 VAECHHRVPEKYLV*NHLRQLY 285
           V   HHR P++Y++ + ++ L+
Sbjct: 346 VLNFHHRTPDRYVMPSWIKMLF 367


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 350 VAECHHRVPEKYLV*NHLRQLY 285
           V   HHR P++Y++ + ++ L+
Sbjct: 346 VLNFHHRTPDRYVMPSWIKMLF 367


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 338 HHRVPEKYLV*NHLRQLY 285
           HHR P++Y++ + ++ L+
Sbjct: 282 HHRTPDRYVMPSWIKMLF 299


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 338 HHRVPEKYLV*NHLRQLY 285
           HHR P++Y++ + ++ L+
Sbjct: 282 HHRTPDRYVMPSWIKMLF 299


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 338 HHRVPEKYLV*NHLRQLY 285
           HHR P++Y++ + ++ L+
Sbjct: 282 HHRTPDRYVMPSWIKMLF 299


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 338 HHRVPEKYLV*NHLRQLY 285
           HHR P++Y++ + ++ L+
Sbjct: 282 HHRTPDRYVMPSWIKMLF 299


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 338 HHRVPEKYLV*NHLRQLY 285
           HHR P++Y++ + ++ L+
Sbjct: 282 HHRTPDRYVMPSWIKMLF 299


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 338 HHRVPEKYLV*NHLRQLY 285
           HHR P++Y++ + ++ L+
Sbjct: 282 HHRTPDRYVMPSWIKMLF 299


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 540 STIYLPRVFRSPYLDPLEYVRSQSLHL*QFNSRPGIYVII--YSFIYNR 400
           STI+L     S     +++VRS   +L Q     G+ VII   SF  NR
Sbjct: 198 STIHLSTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNR 246


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 367 GWLTCYSTCSQSVVYK*IYYYIDPGS*VKLS 459
           GW     TC   ++   ++Y     + VKLS
Sbjct: 45  GWFKAIGTCGSHIIIVGLFYEFGLITHVKLS 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,711
Number of Sequences: 438
Number of extensions: 4449
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)