Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0561
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 157 2e-39
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 154 1e-38
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 83 4e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 5e-11
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.021
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 30 0.25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 3.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 4.1
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.5
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 5.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.2
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 25 7.2
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 25 7.2
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 9.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 157 bits (380), Expect = 2e-39
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = +1
Query: 259 TLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLT 438
TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL
Sbjct: 198 TLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLN 257
Query: 439 EFQTNLVPYPRIHFPLVTYAPVI 507
EFQTNLVPYPRIHFPLVTY+P++
Sbjct: 258 EFQTNLVPYPRIHFPLVTYSPIV 280
Score = 121 bits (292), Expect = 8e-29
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 181
YT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L
Sbjct: 112 YTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNL 171
Query: 182 EFAIYPAPQVSTAVVEPYNSILTT 253
+F++YPAPQVST+VVEPYNS+LTT
Sbjct: 172 QFSVYPAPQVSTSVVEPYNSVLTT 195
Score = 85.4 bits (202), Expect = 6e-18
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +3
Query: 510 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 653
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIP 329
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 154 bits (373), Expect = 1e-38
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +1
Query: 259 TLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLT 438
TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL
Sbjct: 194 TLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLA 253
Query: 439 EFQTNLVPYPRIHFPLVTYAPVI 507
EFQTNLVPYPRIHFPLVTYAP++
Sbjct: 254 EFQTNLVPYPRIHFPLVTYAPIV 276
Score = 119 bits (286), Expect = 4e-28
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +2
Query: 2 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 181
YT+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL
Sbjct: 108 YTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKL 167
Query: 182 EFAIYPAPQVSTAVVEPYNSILTT 253
+F++YPAPQVST+VVEPYNS+LTT
Sbjct: 168 QFSVYPAPQVSTSVVEPYNSVLTT 191
Score = 85.4 bits (202), Expect = 6e-18
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +3
Query: 510 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 653
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIP 325
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.6 bits (195), Expect = 4e-17
Identities = 35/81 (43%), Positives = 54/81 (66%)
Frame = +1
Query: 262 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTE 441
+E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN DL +
Sbjct: 193 VENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRK 252
Query: 442 FQTNLVPYPRIHFPLVTYAPV 504
N+VP+PR+HF +V +AP+
Sbjct: 253 LAVNMVPFPRLHFFMVGFAPL 273
Score = 66.5 bits (155), Expect = 3e-12
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = +2
Query: 2 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 181
YT G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +Y +
Sbjct: 106 YTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMA 165
Query: 182 EFAIYPAPQVSTAVVEPYNSILTTPQ 259
F++ PAP+ S VVEPYN+ L+ Q
Sbjct: 166 TFSVAPAPKSSDTVVEPYNATLSMHQ 191
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 528 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 647
+ +SV E+T F+ N MV DPRHG+Y+ L+RG V
Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKV 321
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.5 bits (145), Expect = 5e-11
Identities = 27/78 (34%), Positives = 45/78 (57%)
Frame = +1
Query: 268 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 447
++D ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSII 257
Query: 448 TNLVPYPRIHFPLVTYAP 501
+L+P PR HF L +Y P
Sbjct: 258 ASLIPSPRCHFLLTSYTP 275
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 181
Y+ + I + ++D I + AD L+GF + H L+ERL+ Y KK
Sbjct: 108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQ 167
Query: 182 EFAIYPAPQ-VSTAVVEPYNSIL 247
++++P Q VS VV+PYNS+L
Sbjct: 168 TYSVFPNSQSVSDVVVQPYNSLL 190
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 462 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 301
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 537 KAVHGRPSRQDDWRVRDQWEVDTGVRHQVSL 445
K +H RP ++ DWR +QWE TG +++L
Sbjct: 21 KIIHTRPHKKCDWRSWEQWE-STGNPVRIAL 50
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 457 VPYPRIHFPLVTYAPVILPRRPTMNSFPSPRSQTHASSPPTR 582
VP P P V+ +P P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 418 ALNVDLTEFQTNLVPYPRIHFPLVT--YAPVILPRRPTMNSFPSPRSQTHASSPPTRW*N 591
A +V++ E +TN +P HFP T AP +P S + T+ N
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPA-SEEKPATGPAEESTSTQNVEQASTQNDN 426
Query: 592 ATPV 603
TP+
Sbjct: 427 GTPI 430
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 229 ALQLYPHHPTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT-ASL 405
++Q PH T+ H+ A ++DN ++ + +++ + P+ T+ N + +T L
Sbjct: 582 SIQSTPHSIRTIPHATHAMVLDNRLLWVVVGKSIYVYDPS-TSENESASVLAKPMTPPGL 640
Query: 406 RFDGALNVDLTEFQTNLVPYPRI 474
D + ++ F T+LV Y +
Sbjct: 641 IGDISCGTTISNF-TDLVFYGHV 662
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 654 WVRRHHGTAYSKPCTCHDGG 595
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 167 KKSKLEFAIYPAPQVSTAVVEPYNSILTTPQPLSTLTVLS 286
K S L P PQVS++ + + P P+ST T S
Sbjct: 216 KSSILSLYASPRPQVSSSSITTNATYQNLPSPVSTSTTSS 255
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 456 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 283
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 486 GHVRASHLAEK-AYHEQLSVAEITNACFEPANQMV 587
GH +A + K ++H L V E+TN +Q++
Sbjct: 26 GHAKAEEICAKLSFHNTLRVRELTNVQLTTLSQLL 60
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 146 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTPQPLSTL 274
+L D +L+F + +++ +V+P+ +T P S+L
Sbjct: 29 KLMSDRNANQELDFFFPKSKHIASTLVDPFGKTCSTASPASSL 71
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 167 KKSKLEFAIYPAPQVSTAVVEPYNSILTTPQPLSTLTVLSW 289
KK KL+ A P P VST N + + PL L +LS+
Sbjct: 197 KKGKLDQAKIPPPLVSTL---NRNELFPSNGPLEVLEILSF 234
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 409 FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVILPRRPTMNSFPSPRSQTHASSP-PTRW 585
FD +N D+T YP + ++ P+ P+ +N +S+ +P P+ W
Sbjct: 336 FDSVINKDVTSESRMSTSYPAVLEAFKSFNPIKAPKAEYLN-----QSRASMGNPSPSNW 390
Query: 586 *N 591
N
Sbjct: 391 NN 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,024
Number of Sequences: 5004
Number of extensions: 58967
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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