Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0558
         (636 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5TTM1 Cluster: ENSANGP00000026284; n=1; Anopheles gamb...    52   1e-05
UniRef50_Q17003 Cluster: Putative reverse transcriptase; n=29; C...    52   1e-05
UniRef50_UPI0000E47234 Cluster: PREDICTED: hypothetical protein;...    41   0.022
UniRef50_Q9U997 Cluster: Reverse transcriptase; n=1; Anopheles m...    40   0.050
UniRef50_UPI0000E47148 Cluster: PREDICTED: similar to endonuclea...    39   0.088
UniRef50_UPI0000E4A76C Cluster: PREDICTED: hypothetical protein;...    36   0.82 
UniRef50_Q4F8P9 Cluster: Reverse transcriptase; n=2; Aedes aegyp...    36   1.1  
UniRef50_Q54FI3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  

>UniRef50_Q5TTM1 Cluster: ENSANGP00000026284; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000026284 - Anopheles gambiae
           str. PEST
          Length = 763

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 25/75 (33%), Positives = 38/75 (50%)
 Frame = +3

Query: 285 CYRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQ 464
           C+R+Y+     S+ K P+ FW ++   + SA  LPS   Y+G +  S   +C LF   F+
Sbjct: 247 CHRSYLKQTARSLCKYPRRFWSYMDKKRKSAG-LPSIKRYDGDSACSLPEMCKLFALRFK 305

Query: 465 SNFLNTATADHSTAD 509
            NF +  T     AD
Sbjct: 306 DNFASQTTGPEDVAD 320


>UniRef50_Q17003 Cluster: Putative reverse transcriptase; n=29;
           Culicidae|Rep: Putative reverse transcriptase -
           Anopheles gambiae (African malaria mosquito)
          Length = 1049

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 25/78 (32%), Positives = 45/78 (57%)
 Frame = +3

Query: 288 YRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQS 467
           YR Y++ ++ ++ + P  FWRF  + K  + + P ++TY+G T+ + + +CNLF + F  
Sbjct: 452 YRRYLSKIQRNLCRWPDSFWRFYNS-KTKSTHTPKSITYKGATSANTNEMCNLFADRFAD 510

Query: 468 NFLNTATADHSTADNSWV 521
            F + A  D  T D + V
Sbjct: 511 CF-SPAMNDTDTIDAALV 527


>UniRef50_UPI0000E47234 Cluster: PREDICTED: hypothetical protein;
           n=3; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 762

 Score = 41.1 bits (92), Expect = 0.022
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +3

Query: 291 RAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQSN 470
           R++ A +  +I ++PK FWR+  +   S +++ S +  +GQ   +   + N+  EYF S 
Sbjct: 169 RSFEADLVENIGQNPKAFWRYANSKVKSKSHIVSLMKEDGQPAQTDSEMANILNEYFSSV 228

Query: 471 F 473
           F
Sbjct: 229 F 229


>UniRef50_Q9U997 Cluster: Reverse transcriptase; n=1; Anopheles
           merus|Rep: Reverse transcriptase - Anopheles merus
           (Mosquito)
          Length = 329

 Score = 39.9 bits (89), Expect = 0.050
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 288 YRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQS 467
           YR++I   E  +   P  FW F    + +  ++P +++Y GQT+     ICN     F  
Sbjct: 3   YRSFIRRTERQLFSKPTRFWSFWNKRR-NIRSIPPSMSYNGQTSIDTSDICNTLANRFAD 61

Query: 468 NF 473
            F
Sbjct: 62  AF 63


>UniRef50_UPI0000E47148 Cluster: PREDICTED: similar to
           endonuclease/reverse transcriptase; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease/reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 810

 Score = 39.1 bits (87), Expect = 0.088
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 255 RKRAKILEDDCYRAYIASV-ESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDS 425
           RK  K      +  Y+  + E+S+ + PK FW ++ + K  AN +P+  T  G  TDS
Sbjct: 215 RKAIKAKMRKSHEEYVKGILENSLKEKPKKFWSYISSLKKDANGIPTLKTDHGPATDS 272


>UniRef50_UPI0000E4A76C Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 844

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 318 SILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQSNFLNTATA 491
           ++ K+PK FWR+ K +  +   LP     +G    S +   ++F  +F++ F +  T+
Sbjct: 56  NVKKNPKAFWRYAKDSLKTRGGLPDLRKTDGTFATSDEEKADIFNTFFETTFTDEDTS 113



 Score = 33.5 bits (73), Expect = 4.4
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 318 SILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQSNFLNTATA 491
           ++ K+PK FWR+ K +  +   LP     +G    S +   ++   +F++ F +  T+
Sbjct: 279 NVKKNPKAFWRYAKDSLKTRGGLPDLRKTDGTFATSDEEKADILNTFFETTFTDEDTS 336


>UniRef50_Q4F8P9 Cluster: Reverse transcriptase; n=2; Aedes
           aegypti|Rep: Reverse transcriptase - Aedes aegypti
           (Yellowfever mosquito)
          Length = 820

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 288 YRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQ- 464
           Y  Y    E ++  +PK FW F+  +K   N LP ++  + ++ D       LF   FQ 
Sbjct: 245 YARYKRRTEQNLRTNPKQFWSFI-NSKRKENGLPISMYLDEKSADCASDKYELFAAQFQR 303

Query: 465 --SNFLNTATADHSTADNS 515
             +NF+   +  H   D S
Sbjct: 304 ASNNFVAAPSQVHVALDYS 322


>UniRef50_Q54FI3 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 2968

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 285  CYRAYIASVE-SSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYF 461
            CY  Y+  +E   +L  P ++W+ ++ +     ++   L    Q+    ++ C+    YF
Sbjct: 866  CYGKYLTPIECKQLLSSPNYWWKNIRESVLFKESIEQILQNHQQSLTFIEITCHPILNYF 925

Query: 462  QSNFLNTATADHS 500
             S  L +++  ++
Sbjct: 926  LSQLLKSSSKSNT 938


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,478,474
Number of Sequences: 1657284
Number of extensions: 10532327
Number of successful extensions: 24675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24663
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)