Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0558
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   4.0  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.1  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    25   9.1  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   9.1  

>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 375 ANNLPSTLTYEGQTTDSGDVICNLFCEYFQSNFLNTATADHSTADNSWV 521
           +N+L    T E  T    DV+ N +  YF  +     + D S AD +++
Sbjct: 80  SNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTVTSIDVSPADETFL 128


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 240 NLFSPRKRAKILEDDCYRAYIASVESSILKDPKFFWRF 353
           NL      +K+LED  Y     S+ +S  ++   FW F
Sbjct: 426 NLAFVEPSSKLLEDQTYLHLFGSIYNSFREERVMFWIF 463


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 143  PTLVHIPVKKSFEGKIQVFEKNTR 214
            P +  IPV+  FEG +Q  +K +R
Sbjct: 4140 PCMNTIPVRIKFEGALQTLKKTSR 4163


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 440 TDNVPRVSCLSFVCESRRKVICATFVSFNKS 348
           +D+ P  + LS +C S   V    F   NKS
Sbjct: 90  SDHEPHTASLSHICHSDSSVFLRAFSETNKS 120


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 20  FLILSLSCKSNNRNVLFSPSH*NQFY*V*TASSKVLCS*FVPTLVHIPVKKSFEGKIQVF 199
           ++ L  S   +NRNV  S +H  Q+Y V   +S  +     P +V  PV  +FE     F
Sbjct: 448 YICLKNSAVQSNRNVSPSANHNEQWYLVRFTTSATISQDSPPCIVE-PV--TFEEVDLEF 504

Query: 200 EKN 208
           EK+
Sbjct: 505 EKH 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,000
Number of Sequences: 5004
Number of extensions: 49078
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)