Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0558
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604...    29   3.1  
08_02_1350 - 26312275-26313613,26314833-26315110                       27   9.4  

>07_01_0780 +
           6047375-6047494,6047603-6047713,6047804-6047926,
           6048035-6048168,6048273-6049551
          Length = 588

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 267 KILEDDCYRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLT 401
           K++EDDC + Y+A      L  P   W    T  G   +  S  T
Sbjct: 4   KMIEDDCEKVYVAISPIQSLCPPMLLWTLRNTPPGKTYSCCSAQT 48


>08_02_1350 - 26312275-26313613,26314833-26315110
          Length = 538

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 382 TFLLLSHTKDKQLTLGTLSVIFFVNTSN 465
           T LLL HTK K LT+G   VI  + T N
Sbjct: 138 TVLLLGHTKRKDLTIGEGKVI--ITTDN 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,434
Number of Sequences: 37544
Number of extensions: 266969
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)