Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0558
         (636 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    52   2e-08
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    46   8e-07
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   8.1  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 52.0 bits (119), Expect = 2e-08
 Identities = 25/78 (32%), Positives = 45/78 (57%)
 Frame = +3

Query: 288 YRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQS 467
           YR Y++ ++ ++ + P  FWRF  + K  + + P ++TY+G T+ + + +CNLF + F  
Sbjct: 452 YRRYLSKIQRNLCRWPDSFWRFYNS-KTKSTHTPKSITYKGATSANTNEMCNLFADRFAD 510

Query: 468 NFLNTATADHSTADNSWV 521
            F + A  D  T D + V
Sbjct: 511 CF-SPAMNDTDTIDAALV 527


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 46.4 bits (105), Expect = 8e-07
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +3

Query: 288 YRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVICNLFCEYFQS 467
           + AY + ++S    DP  FW+FV+  +G  N LP+ +  + +T  +   IC LF  +F  
Sbjct: 381 FEAYSSRLQSRFRSDPASFWQFVRIRRG-CNTLPNEMVLDSRTASTPVEICELFSAHFSQ 439

Query: 468 NF 473
            F
Sbjct: 440 MF 441


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 595 SSFKILSRINFNTGYAVR 542
           S FK+    NFN+GY +R
Sbjct: 725 SQFKVEYSDNFNSGYGLR 742


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,249
Number of Sequences: 2352
Number of extensions: 11876
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)