Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0558
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin prot...    28   6.4  
Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin protein
           21 protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 333 PKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGD 431
           P FFW+FV  +  +  ++ S L +  QT D G+
Sbjct: 124 PAFFWKFVGLDCFNGMDIVSFLEFYEQTDDPGE 156


>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  CFIFAKPLKSVLLSLNCIVESIMLLVCS 144
           C  F+K  K    ++ C V SI++L+CS
Sbjct: 128 CATFSKDYKKKQSAIKCAVISILVLICS 155


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +3

Query: 258 KRAKILEDDCYRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDVI 437
           K+   L+ DC    I+S +  + K  +    F+K  K S N+   TLT +   +DSG+  
Sbjct: 724 KKRDALKIDCSCDLISSRQRMVWKRQQQVILFLKKAKFSDNDQILTLT-QTTFSDSGEYS 782

Query: 438 CNLFCE 455
           C L+ +
Sbjct: 783 CELWVD 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,964
Number of Sequences: 27780
Number of extensions: 267324
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)