Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0558
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote...    31   0.85 
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac...    28   6.0  
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ...    28   6.0  
At2g38365.1 68415.m04713 expressed protein                             28   6.0  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    28   6.0  
At1g63110.3 68414.m07131 cell division cycle protein-related con...    27   7.9  
At1g63110.2 68414.m07132 cell division cycle protein-related con...    27   7.9  
At1g63110.1 68414.m07130 cell division cycle protein-related con...    27   7.9  

>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 890

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 264 AKILEDDCYRAYIASVESSILKDPKFFWRFVKTNKGSANNLPSTLTYEGQTTDSGDV 434
           + +L D  Y+A +  +E S L DP      + +  GS   +P    Y  Q T  G+V
Sbjct: 739 SNVLLDSGYKAVLGEIEISKLLDPSRGTASISSVAGSFGYIPPEYAYTMQVTAPGNV 795


>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
           family protein contains Pfam profile PF00847: AP2 domain
          Length = 226

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 247 KRFHNRQYCCISGIFFKNL 191
           KR HN++ C + G+++KN+
Sbjct: 107 KRVHNQEPCLMRGVYYKNM 125


>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 538

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 261 SYEERKGFIIVSIAVFLVFFSKTCIFPSKLFLT----GMCTRVGTN 136
           SY++ +G ++  +   L FF    + P  LFLT    G C   G N
Sbjct: 348 SYKDEEGVVLDVLCASLSFFKHPKLHPHTLFLTTIDRGTCLACGEN 393


>At2g38365.1 68415.m04713 expressed protein
          Length = 120

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 458 VFTKKITDNVPRVSCLSFVCESR 390
           V + KITD+   V CLSF+ +SR
Sbjct: 2   VISSKITDDCSYVKCLSFMMKSR 24


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
 Frame = +3

Query: 312 ESSILKDPKFFWRFVKTNKGSANNLPSTLTYEG-QTTDSGDVIC----------NLFCEY 458
           ESS L+   ++W  + TNK   N +      +G     SG V+           +LF E+
Sbjct: 638 ESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEF 697

Query: 459 FQSNFLNTATADHSTADNSWVLIQTLH 539
           F     +   +DH+ A NS ++   +H
Sbjct: 698 FH-RMKSDGWSDHAAAYNSALVCLCVH 723


>At1g63110.3 68414.m07131 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 407

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 215 FWYFFQKLVFFLQNFF 168
           FWYFF ++  F +NFF
Sbjct: 253 FWYFFAEVFDFFRNFF 268


>At1g63110.2 68414.m07132 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 397

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 215 FWYFFQKLVFFLQNFF 168
           FWYFF ++  F +NFF
Sbjct: 243 FWYFFAEVFDFFRNFF 258


>At1g63110.1 68414.m07130 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 469

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 215 FWYFFQKLVFFLQNFF 168
           FWYFF ++  F +NFF
Sbjct: 315 FWYFFAEVFDFFRNFF 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,988
Number of Sequences: 28952
Number of extensions: 240370
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)