Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0556
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 250 5e-67
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 250 5e-67
SB_56| Best HMM Match : Actin (HMM E-Value=0) 250 5e-67
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 250 5e-67
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 250 5e-67
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_54| Best HMM Match : Actin (HMM E-Value=0) 101 4e-22
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 91 8e-19
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 77 1e-14
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 55 5e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 42 3e-04
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 38 0.005
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 33 0.13
SB_21738| Best HMM Match : YTH (HMM E-Value=3.9e-06) 32 0.40
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.6
SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) 29 2.1
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07) 29 2.8
SB_46582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8206| Best HMM Match : Kunitz_legume (HMM E-Value=3) 29 2.8
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18224| Best HMM Match : Maf (HMM E-Value=6.8) 29 3.7
SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 4.9
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 28 4.9
SB_4157| Best HMM Match : Ribosomal_L32p (HMM E-Value=2.7) 28 4.9
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44) 28 6.5
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 8.6
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 27 8.6
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 27 8.6
SB_19391| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 250 bits (613), Expect = 5e-67
Identities = 117/131 (89%), Positives = 120/131 (91%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRHQGVMVGMGQKD SKRGILTLKYPIEHGIVTNWDDME
Sbjct: 25 DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 84
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 144
Query: 532 AFGRTTGIVLD 564
A GRTTGIV+D
Sbjct: 145 ASGRTTGIVMD 155
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/59 (45%), Positives = 33/59 (55%)
Frame = +3
Query: 111 KLPRLVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
++ LVVDNGSGMCKAGFAG P G+ G G + SYVGDEA ++
Sbjct: 5 EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 250 bits (613), Expect = 5e-67
Identities = 117/131 (89%), Positives = 120/131 (91%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRHQGVMVGMGQKD SKRGILTLKYPIEHGIVTNWDDME
Sbjct: 24 DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 83
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 143
Query: 532 AFGRTTGIVLD 564
A GRTTGIV+D
Sbjct: 144 ASGRTTGIVMD 154
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/55 (49%), Positives = 31/55 (56%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LVVDNGSGMCKAGFAG P G+ G G + SYVGDEA ++
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 250 bits (613), Expect = 5e-67
Identities = 117/131 (89%), Positives = 120/131 (91%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRHQGVMVGMGQKD SKRGILTLKYPIEHGIVTNWDDME
Sbjct: 24 DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 83
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 143
Query: 532 AFGRTTGIVLD 564
A GRTTGIV+D
Sbjct: 144 ASGRTTGIVMD 154
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/55 (49%), Positives = 31/55 (56%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LVVDNGSGMCKAGFAG P G+ G G + SYVGDEA ++
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 250 bits (613), Expect = 5e-67
Identities = 117/131 (89%), Positives = 120/131 (91%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRHQGVMVGMGQKD SKRGILTLKYPIEHGIVTNWDDME
Sbjct: 25 DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 84
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 144
Query: 532 AFGRTTGIVLD 564
A GRTTGIV+D
Sbjct: 145 ASGRTTGIVMD 155
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/55 (49%), Positives = 31/55 (56%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LVVDNGSGMCKAGFAG P G+ G G + SYVGDEA ++
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 250 bits (613), Expect = 5e-67
Identities = 117/131 (89%), Positives = 120/131 (91%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRHQGVMVGMGQKD SKRGILTLKYPIEHGIVTNWDDME
Sbjct: 25 DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 84
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 144
Query: 532 AFGRTTGIVLD 564
A GRTTGIV+D
Sbjct: 145 ASGRTTGIVMD 155
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV+DNGSGMCKAGFAG P G+ G G + SYVGDEA ++
Sbjct: 9 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 118 bits (284), Expect = 4e-27
Identities = 56/67 (83%), Positives = 56/67 (83%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRHQGVMVGMGQKD SKRGILTLKYPIEHGIVTNWDDME
Sbjct: 24 DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 83
Query: 352 KIWHHTF 372
KI TF
Sbjct: 84 KIMFETF 90
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = +1
Query: 445 NREKMTQIMFETFNTPAMYCRLQAVLSLYAFGRTTGIVLD 564
N + M +IMFETFN+PAMY +QAVLSLYA GRTTGIV+D
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 117
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV+DNGSGMCKAGFAG P G+ G G + SYVGDEA ++
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 118 bits (284), Expect = 4e-27
Identities = 59/131 (45%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Frame = +1
Query: 181 PRAVFPSIVGRP--RHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDMEK 354
P +FPS+VGRP R + + KDLM R +L + YP+++GIV NWDDM+
Sbjct: 28 PAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKH 87
Query: 355 IWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
+W +TF +++ + P VLLTE PLNP NREKM ++MFE + +Y +QAVL+LY
Sbjct: 88 VWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLY 147
Query: 532 AFGRTTGIVLD 564
A G TG+V+D
Sbjct: 148 AQGLLTGVVID 158
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVP--LDRGKAPPSGRDGRYGTEGSYVGDEAHEQKRY 293
+V DNG+G K G+AG + P + R S + G + VGDEA Q RY
Sbjct: 9 IVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA-SQLRY 66
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 101 bits (242), Expect = 4e-22
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +1
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MY +QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 532 AFGRTTGIVLD 564
A GRTTG V D
Sbjct: 2189 ASGRTTGTVFD 2199
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQ 225
D++PR VFP+IVGRPRH+
Sbjct: 2113 DESPRVVFPAIVGRPRHK 2130
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFA 167
+V+DNGSG CKAG +
Sbjct: 2097 VVIDNGSGFCKAGLS 2111
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 90.6 bits (215), Expect = 8e-19
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = +1
Query: 400 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLYAFGRTTGIVLD 564
+HPVLLTEAPLNP+ NREK ++ FETFN PA++ +QAVLSLYA GRTTG+VLD
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLD 180
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/85 (37%), Positives = 55/85 (64%)
Frame = +1
Query: 310 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 489
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 490 PAMYCRLQAVLSLYAFGRTTGIVLD 564
PA + +VL+ +A GR+ G+V+D
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVID 87
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 466 IMFETFNTPAMYCRLQAVLSLYAFGRTTGIVLD 564
IMFE FN+PA+Y +QAVLSLYA GRTTG+V D
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFD 33
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 304 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 417
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = +1
Query: 355 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLYA 534
I H F + L+V P +H V++T +E++ +I+ F A+Y + Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 535 FGRTTGIV 558
+ +GIV
Sbjct: 572 YSAVSGIV 579
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQ 225
DDAP+ VFP IVGRPRHQ
Sbjct: 1375 DDAPKGVFPPIVGRPRHQ 1392
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 93 QDVRRMKLPR-LVVDNGSGMCKAGFAG 170
++V R + P LV+D GS M K GFAG
Sbjct: 1348 EEVERSEAPTPLVIDVGSHMWKVGFAG 1374
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 442 ANREKMTQIMFETFNTPAMYCRLQAVLSLYAFGRTTGIV 558
A +E++ +I+ F A+Y + Q++L++Y++ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_21738| Best HMM Match : YTH (HMM E-Value=3.9e-06)
Length = 183
Score = 31.9 bits (69), Expect = 0.40
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
Frame = +3
Query: 204 RGKAPPSGRDGRYGTEGSYVGDEAHEQKRYPDPQIPHRTRNRH*LG*HGEDLASYLLQ*A 383
RGK PP G G++ G +G + YP PH + + LLQ A
Sbjct: 67 RGKLPPEGNSGKW-QHG--IGPVTQQPAVYPTVYAPHAASMPIPVPVPAQHSRQTLLQ-A 122
Query: 384 ACRPRGTPSPAH*GSPQP-QGQQREDDPDHVRNIQHARHVLSPPSRALAVRVRSYHRYRA 560
RP T +PQP + Q H+RN ++ HV+ P + + R H R
Sbjct: 123 YPRPAMT-------APQPIRSQPLYGVHPHMRNSRYPGHVIPAPMQPQSPRGVGSHALRP 175
Query: 561 G 563
G
Sbjct: 176 G 176
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 301 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 453
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 180 SSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQKRYPD-PQIPHRTRNRH 332
S R P + +P S DGR + S GD Q+R P+ P+I + N+H
Sbjct: 143 SPERQPTNAKGSPKSLSDGRESSHLSNFGDVLTTQRRLPEAPKIAMSSFNKH 194
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 197 GNTARGASSSCETGLAHTGAIVYYQT 120
G G+ S ETGLAHTGAI+ Q+
Sbjct: 9 GENGSGSIVSGETGLAHTGAIIDNQS 34
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 310 PIEHGIVTNWDDMEKIWHHTFYNE 381
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)
Length = 135
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 180 SIILLRNRPCTYRSHCLLPD 121
S +L R R C YRSH LLP+
Sbjct: 49 SCVLFRGRYCQYRSHNLLPE 68
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 195 EHGARSIILLRNRPCTYRSHCLLPD 121
++ S +L R + C YRSH LLP+
Sbjct: 98 QYAGNSCVLFRGQYCQYRSHNLLPE 122
>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
Length = 807
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 405 PSPAH*GSPQPQGQ---QREDDPDHVRNIQHARHVLSPPSRALAVRVRSYHR 551
P A +P+PQ + Q +PDHVR + V P SR+ V R+Y R
Sbjct: 704 PRDATTHTPEPQQEPEVQSHMEPDHVRYMLERMSVNYPTSRSSFVDPRTYPR 755
>SB_46582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 174 ILLRNRPCTYRSHCLLPDAATSFVAHLELVFN*IVLL*IN 55
++LRNRP T+R LP T+F HL VL+ +N
Sbjct: 57 VILRNRPITFRLQVCLPSLQTAF-NHLRKTTAIDVLIWVN 95
>SB_8206| Best HMM Match : Kunitz_legume (HMM E-Value=3)
Length = 504
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = -3
Query: 289 LFCSCASSPT*DPSVPYRPSRPDG------GAFPRSRGTRREEHHPPAKPAL 152
+F A+ PT DP+ +P R + G R+ + +EEHHP + P +
Sbjct: 269 IFHQLANLPT-DPATIQKPKRKENIPNMREGEHSRNENSTKEEHHPASLPEM 319
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 204 RGKAPPSGRDGRYGTEGSYVGDEAHEQKRYPDP--QIPHRTRN 326
+G+ P G G G G+ + K +PDP ++PH RN
Sbjct: 124 QGQPGPEGPQGPAGPSGADGPQGPEDLKAHPDPLEKVPHHLRN 166
>SB_18224| Best HMM Match : Maf (HMM E-Value=6.8)
Length = 603
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 218 RGLPTIEGNTARGASSSCE 162
R PT +GNTA+G+++ CE
Sbjct: 509 RAHPTTQGNTAKGSTAKCE 527
>SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 195 EHGARSIILLRNRPCTYRSHCLLP 124
++ S +L R + C YRSH LLP
Sbjct: 295 QYAGNSCVLFRGQYCQYRSHNLLP 318
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 214 AFPRSRGTRREEHHPPA-KPALHIPEPLSTTR 122
A P+ RG R +PP KPA +P P+ +R
Sbjct: 916 ATPKKRGPGRPRKYPPKEKPAKVVPPPVEVSR 947
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 132 DNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEG 254
D G G + G+ GG R DRG G +G YG G
Sbjct: 140 DGGGGGYRGGYRGGYRGGYRGGRDRGGGYGGGGEGGYGMGG 180
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 314 MGYLRVRIPLLLMCLISYIRSFCPIPTITP 225
MGY+ ++ P + L+S + P PT+TP
Sbjct: 363 MGYVVIKAPYPVWTLLSSTPTITPTPTVTP 392
>SB_4157| Best HMM Match : Ribosomal_L32p (HMM E-Value=2.7)
Length = 311
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = -1
Query: 357 NLLHVIPVSDDSVFDGVFEGQ-DTSFAHVPHLLHKILLSHTDHHALMAGPSHDRGEHGAR 181
NL +V+ + + + D + GQ ++SF + + HK+++ +H L G R
Sbjct: 140 NLSYVVMHARERIRD-ISAGQTNSSFKTLQTIHHKLVVVQYNHKLLCQGHHVYRSTFAMT 198
Query: 180 SIILLRNRPCTYR---SHC 133
+ + RN C Y SHC
Sbjct: 199 LVAVDRNEACRYAVELSHC 217
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -2
Query: 509 RRQYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGATRSSL*K-V*CQIFSMSSQL 333
R++Y+ + N ++ ++FSL A+GL A ++ T + G + + + V Q + +
Sbjct: 1085 RKEYLKDLWNYLEILVLLFSLSAIGLYFARLALTKYTIGNMKETPDRFVSFQYVAFLDEW 1144
Query: 332 VTIPCSM 312
VT CS+
Sbjct: 1145 VTATCSL 1151
>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
K+ T YN L V +PV + + + N + TQ+M T P Y +L V + Y
Sbjct: 81 KLMVFTRYNPLMVFTRYNPVRYAQLLVFTRYNPVRYTQLMVFTRYNPVRYTQLM-VFTRY 139
Query: 532 AFGRTTGIVLDLR 570
R T +++ R
Sbjct: 140 NHVRYTQLMVFTR 152
>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 497 CTVASKPCSRCTRSVVPPVSCWTSGRPVS 583
C A P + CT++ P C T+ RP +
Sbjct: 925 CLTAYHPTANCTKAYCPTAYCPTANRPTA 953
>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
Length = 788
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 193 TRREEHHPPAKPALHIPEPLSTTRRGNFIRRT 98
T R E PPA P L +S TRRGN RT
Sbjct: 599 TIRLEITPPASPVLGGSSSVSQTRRGNKRART 630
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/62 (32%), Positives = 22/62 (35%)
Frame = +3
Query: 402 TPSPAH*GSPQPQGQQREDDPDHVRNIQHARHVLSPPSRALAVRVRSYHRYRAGPPADRC 581
TP P H P P V I H H PP A + S HR+ PPA
Sbjct: 29 TPHPLHRHHLPPPATASPPTPCIVI-ISHPLHRHHPPPPASSSFPHSLHRHHPPPPASSS 87
Query: 582 LP 587
P
Sbjct: 88 SP 89
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = -3
Query: 253 PSVPYRPSRPDGGAFPRSRGTRREEHHP----PAKPALHIPEPLSTTRR 119
PS RP P+G P G REE P P P L P+ R+
Sbjct: 239 PSFANRPPGPEGYRRPSHEGASREERPPGIPYPDNPRLGERPPIDVRRQ 287
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 268 SPT*DPSVPYRPSRPDGGAFPRS-RGTRREE 179
SPT D V PSR GGA P+ RG R++E
Sbjct: 273 SPTADKQVADPPSRLLGGARPKEFRGHRKDE 303
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = -3
Query: 253 PSVPYRPSRPDGGAFPRSRGTRREEHHP----PAKPALHIPEPLSTTRR 119
PS RP P+G P G REE P P P L P+ R+
Sbjct: 5 PSFANRPPGPEGYRRPSHEGASREERPPGIPYPDNPRLGERPPIDVRRQ 53
>SB_19391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 575 VGRRSSTIPVVRPNAYSESTAWRRQYMAGV 486
V S V+ N YSE WR++Y+A +
Sbjct: 198 VSEEPSMAKVIDINRYSELNRWRKEYLANL 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,815,613
Number of Sequences: 59808
Number of extensions: 537643
Number of successful extensions: 1759
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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