Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0556
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   5.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 382  LRVAPEEHPVLLTEAPLNPKANREKM 459
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 244 GQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDD 345
           G+K ++  +  + KRG++  +  ++    T +DD
Sbjct: 191 GKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 244 GQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDD 345
           G+K ++  +  + KRG++  +  ++    T +DD
Sbjct: 191 GKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 206 TIEGNTARGASSSCETGLAHTGAIVYYQTRQLHSS 102
           TI+G T  G   S +   A        + R +HSS
Sbjct: 187 TIDGETFEGTGPSKKLAKAAASKAALAKLRNVHSS 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,579
Number of Sequences: 438
Number of extensions: 4554
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)