Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0556
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 249 9e-67
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 249 1e-66
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 249 1e-66
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 247 4e-66
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 246 6e-66
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 246 6e-66
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 244 3e-65
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 244 3e-65
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 244 3e-65
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 226 1e-59
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 186 1e-47
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 176 1e-44
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 132 2e-31
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 93 1e-19
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 91 7e-19
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 77 9e-15
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 68 5e-12
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 57 1e-08
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 55 3e-08
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 38 0.007
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 38 0.007
At1g69800.1 68414.m08031 CBS domain-containing protein low simil... 31 0.43
At3g54320.1 68416.m06003 ovule development protein, putative sim... 31 0.75
At4g20910.1 68417.m03031 double-stranded RNA binding protein-rel... 29 3.0
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 3.0
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 3.0
At3g10915.3 68416.m01316 reticulon family protein low similarity... 28 4.0
At3g10915.1 68416.m01314 reticulon family protein low similarity... 28 4.0
At4g32270.1 68417.m04591 UDP-sugar transporter-related contains ... 28 5.3
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 5.3
At1g43245.1 68414.m04985 expressed protein 28 5.3
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 27 7.0
At3g62490.1 68416.m07021 expressed protein hypothetical proteins... 27 7.0
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 27 7.0
At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit, ... 27 9.3
At3g11290.1 68416.m01373 expressed protein 27 9.3
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 27 9.3
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 27 9.3
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 249 bits (610), Expect = 9e-67
Identities = 117/131 (89%), Positives = 119/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRH GVMVGMGQKD SKRGILTLKYPIEHGIV+NWDDME
Sbjct: 26 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV DNG+GM KAGFAG P G+ +G G + +YVGDEA ++
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 249 bits (609), Expect = 1e-66
Identities = 117/131 (89%), Positives = 118/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRH GVMVGMGQKD SKRGILTLKYPIEHGIV NWDDME
Sbjct: 26 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV DNG+GM KAGFAG P G+ +G G + +YVGDEA ++
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 249 bits (609), Expect = 1e-66
Identities = 117/131 (89%), Positives = 118/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRH GVMVGMGQKD SKRGILTLKYPIEHGIV NWDDME
Sbjct: 26 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV DNG+GM KAGFAG P G+ +G G + +YVGDEA ++
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 247 bits (605), Expect = 4e-66
Identities = 116/131 (88%), Positives = 118/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRH GVMVGMGQKD SKRGILTLKYPIEHGIV+NWDDME
Sbjct: 26 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV DNG+GM KAGFAG P G+ +G G + +YVGDEA ++
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 246 bits (603), Expect = 6e-66
Identities = 115/131 (87%), Positives = 117/131 (89%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRH GVMVGMGQKD SKRGILTLKYPIEHGIV NWDDME
Sbjct: 26 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETFN PAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV DNG+GM KAGFAG P G+ +G G + +YVGDEA ++
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 246 bits (603), Expect = 6e-66
Identities = 115/131 (87%), Positives = 117/131 (89%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPSIVGRPRH GVMVGMGQKD SKRGILTLKYPIEHGIV NWDDME
Sbjct: 26 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETFN PAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
LV DNG+GM KAGFAG P G+ +G G + +YVGDEA ++
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 244 bits (598), Expect = 3e-65
Identities = 112/131 (85%), Positives = 118/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPS+VGRPRH GVMVGM QKD SKRGILTLKYPIEHG+V+NWDDME
Sbjct: 26 DDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
+V DNG+GM KAGFAG P G+ G + +YVGDEA ++
Sbjct: 10 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 244 bits (598), Expect = 3e-65
Identities = 112/131 (85%), Positives = 118/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPS+VGRPRH GVMVGM QKD SKRGILTLKYPIEHG+V+NWDDME
Sbjct: 26 DDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
+V DNG+GM KAGFAG P G+ G + +YVGDEA ++
Sbjct: 10 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 244 bits (598), Expect = 3e-65
Identities = 112/131 (85%), Positives = 118/131 (90%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPS+VGRPRH GVMVGM QKD SKRGILTLKYPIEHG+V+NWDDME
Sbjct: 26 DDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDME 85
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMY +QAVLSLY
Sbjct: 86 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 145
Query: 532 AFGRTTGIVLD 564
A GRTTGIVLD
Sbjct: 146 ASGRTTGIVLD 156
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
+V DNG+GM KAGFAG P G+ G + +YVGDEA ++
Sbjct: 10 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 226 bits (552), Expect = 1e-59
Identities = 101/131 (77%), Positives = 115/131 (87%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
DDAPRAVFPS+VGRPRH+GVMVGM +KD ++RGIL+LKYPIEHG+V+NWDDME
Sbjct: 27 DDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARRGILSLKYPIEHGVVSNWDDME 86
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWHHTFYNELR+ PEEHP+LLTEAPLNPK NREKMTQIMFE+F P+MY +QAVLSLY
Sbjct: 87 KIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQIMFESFAFPSMYIGIQAVLSLY 146
Query: 532 AFGRTTGIVLD 564
+ GRTTGIVLD
Sbjct: 147 SSGRTTGIVLD 157
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
+V DNG+GM KAGFAG P G+ G + ++VGDEA ++
Sbjct: 11 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 186 bits (452), Expect = 1e-47
Identities = 88/132 (66%), Positives = 102/132 (77%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDME 351
D+AP+ VFP +VGRPR G+ + + R ILTLK P+EHGIV NWDDME
Sbjct: 20 DEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTLKDPMEHGIVNNWDDME 74
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLY 531
KIWH+TFYNELRV PEEHPVLLTEAP NPKANREKMTQIMFE+F+ PAMY +Q+VL LY
Sbjct: 75 KIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLY 134
Query: 532 AFGRTTGIVLDL 567
+ GRTTG+VLDL
Sbjct: 135 SSGRTTGVVLDL 146
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAGG*CSSRRVPLDRGKAPPSGRDGRYGTEGSYVGDEAHEQK 287
+V D G GM +AGFAG P G+ RDG E SYVG+E H +
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRP----RDGLNPNE-SYVGEEGHANR 53
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 176 bits (428), Expect = 1e-44
Identities = 81/111 (72%), Positives = 93/111 (83%)
Frame = +1
Query: 232 MVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 411
MVGM + DL ++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPV
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPV 60
Query: 412 LLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLYAFGRTTGIVLD 564
LLTEAPLNPKA+REKMTQIMFETF P+MY +QA LSL+A GRTTG VLD
Sbjct: 61 LLTEAPLNPKADREKMTQIMFETFAVPSMYIGMQAALSLHASGRTTGTVLD 111
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 132 bits (319), Expect = 2e-31
Identities = 60/133 (45%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRP--RHQGVMVGMGQKDLM*EMRHMSKRGILTLKYPIEHGIVTNWDD 345
++ P +VFP +VGRP R++ ++ KD++ R L + YP+ +GIV NWDD
Sbjct: 23 ENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQLDINYPVHNGIVQNWDD 82
Query: 346 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLS 525
ME +W H FYNEL++ P + +LLT+ PLNP NREKM + MFE +N ++ ++QAVL+
Sbjct: 83 MEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMIETMFEKYNFAGVFIQIQAVLT 142
Query: 526 LYAFGRTTGIVLD 564
LYA G TG+V+D
Sbjct: 143 LYAQGLLTGLVID 155
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Frame = +1
Query: 301 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 480
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL P +RE +I+FET
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFET 145
Query: 481 FNTPAMYCRLQAVLSLYAFGRT-----TGIVLDL 567
FN P +Y + +VL+L A T TG+V+D+
Sbjct: 146 FNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDV 179
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 117 PRLVVDNGSGMCKAGFAG 170
P +V+DNG+G K GFAG
Sbjct: 7 PAIVIDNGTGYTKMGFAG 24
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 90.6 bits (215), Expect = 7e-19
Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 22/153 (14%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVM--------VGMGQKDLM*EM-RHMSKR----GILTLKY- 309
+DAP+AVFPS++G M +D E + SKR G + Y
Sbjct: 26 EDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYR 85
Query: 310 --------PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 465
PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + REK +
Sbjct: 86 RDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAE 145
Query: 466 IMFETFNTPAMYCRLQAVLSLYAFGRTTGIVLD 564
+MFE + PA++ VL+ +A GR T +V+D
Sbjct: 146 LMFEKYKVPALFMAKNPVLTSFATGRATSLVVD 178
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAG 170
+VVD GS CKAG+AG
Sbjct: 10 IVVDLGSHTCKAGYAG 25
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 77.0 bits (181), Expect = 9e-15
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +1
Query: 310 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFN 486
PIE G++ +WD ME + + Y L E +L T+ PKA RE++ Q+MFETFN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 487 TPAMYCRLQAVLSLYAFGRTTGIVLDL 567
Y QAVLSLYA GR +G +D+
Sbjct: 117 VSGFYASEQAVLSLYAVGRISGCTVDI 143
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 67.7 bits (158), Expect = 5e-12
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 16/111 (14%)
Frame = +1
Query: 172 DDAPRAVFPSIVGRPRHQGVMVGMGQ---KDLM*EMRHMSKRGILT-------------L 303
+DAP+AVFPS+VG G+ + +D + KR + T +
Sbjct: 26 EDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEI 85
Query: 304 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 456
P + GIVT+WD ++ +W H F N L + P EHP+LL E PLN + REK
Sbjct: 86 LSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 123 LVVDNGSGMCKAGFAG 170
+VVD GS CKAG+AG
Sbjct: 10 IVVDLGSHTCKAGYAG 25
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 56.8 bits (131), Expect = 1e-08
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = +1
Query: 181 PRAVFPSIVGRPRHQGV---MVGMGQKD-LM*EMRHMSKRGILTLKYPIEHGIVTNWDDM 348
PR VF +IV RPRH+ + +G D M + ++ G + P + +V ++ M
Sbjct: 41 PRVVFRNIVQRPRHKATGETVTIVGDLDPSMMKYFDCTRSGP---RSPFDSNVVYQFEIM 97
Query: 349 EKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLS 525
E I + F + +HP+L+TE NP +R KM +++FET+ PA+ + A S
Sbjct: 98 EYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYGVPAVAFGVDAAFS 157
Query: 526 LYAFGRTTGI 555
Y + + GI
Sbjct: 158 -YKYNQLHGI 166
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +1
Query: 301 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 480
++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120
Query: 481 FNTPAMY-CRLQAVLSLYAFGRTTGIVL 561
F ++Y Q+++ LY R +L
Sbjct: 121 FGFSSLYIAHPQSLVHLYEASRQPDSIL 148
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +1
Query: 367 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYCRLQA 516
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 517 VLSLYAFGRTTGIVLDL 567
VL+LYA RT+GIV+++
Sbjct: 241 VLALYAARRTSGIVVNI 257
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +1
Query: 367 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYCRLQA 516
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 517 VLSLYAFGRTTGIVLDL 567
VL+LYA RT+GIV+++
Sbjct: 241 VLALYAARRTSGIVVNI 257
>At1g69800.1 68414.m08031 CBS domain-containing protein low
similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
sapiens}; contains Pfam profile PF00571: CBS domain
Length = 447
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -2
Query: 551 PVVRPNAYSESTAWRRQYMAGVLNVSNMI-WVIFS--LLALGLRGASVSRTGCSSGA 390
PV+ + + S WR +Y+ G+++ S++I WV+ S L A+ L S + G +GA
Sbjct: 85 PVINTD-HESSLDWRERYL-GIIDYSSIILWVLESAELAAIALSATSATAAGVGAGA 139
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 280 SCASSPT*DPSVPYRPSRPDGGAFPRSRGTRREEHHPPAKPALHIPEPLSTTRRGNFIR 104
+C+SSP+ S S P PR + +R + P+ H P ++TRR + R
Sbjct: 9 TCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSPASTRRSSIYR 67
>At4g20910.1 68417.m03031 double-stranded RNA binding
protein-related / DsRBD protein-related contains weak
similarity to Pfam profile PF00035: Double-stranded RNA
binding motif
Length = 942
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 207 HDRGEHGARSIILLRNRPCTYRSHCLLPD 121
HD + G + + + PC YR H LP+
Sbjct: 31 HDSSQSGCLGLAIPQKGPCLYRCHLQLPE 59
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 295 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 456
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 295 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 456
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At3g10915.3 68416.m01316 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 156
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 575 VGRRSSTIPVVRPNAYSESTAWRRQYMA-GVLNVSNMIWVIFSLLAL 438
VGR V A ++ WRR++++ GV+ +S + W+IF L
Sbjct: 20 VGRLRFISSWVVAKATADLLLWRRRHLSLGVIIISTVAWLIFEFSGL 66
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 575 VGRRSSTIPVVRPNAYSESTAWRRQYMA-GVLNVSNMIWVIFSLLAL 438
VGR V A ++ WRR++++ GV+ +S + W+IF L
Sbjct: 20 VGRLRFISSWVVAKATADLLLWRRRHLSLGVIIISTVAWLIFEFSGL 66
>At4g32270.1 68417.m04591 UDP-sugar transporter-related contains
weak similarity to Swiss-Prot:Q95YI5 UDP-sugar
transporter UST74c [Drosophila melanogaster]
Length = 364
Score = 27.9 bits (59), Expect = 5.3
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -2
Query: 329 TIPCSMGYLRVRIPLLLMCLISYIRSFC 246
T+P ++ YL + LL C+++++ ++C
Sbjct: 101 TLPLAIAYLLYMVVLLCSCVLAFVLNYC 128
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 345 VIPVSDDSVFDGVFEGQDTSFAHVPHLLHKILLSHTDHHALMAGPSHDRG-EHGARSIIL 169
++ ++D V DG F +F V +++ ++L H H G SHD G +G R+ L
Sbjct: 125 LVQETNDDV-DGFFMVLVAAFGLVVNIIMIVVLGHDHGHGHDHGHSHDHGHSYGERAEQL 183
Query: 168 L 166
L
Sbjct: 184 L 184
>At1g43245.1 68414.m04985 expressed protein
Length = 558
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 294 DTSFAHVPHLLHKILLSHTDHHALMAGPSHDRGEHGARSII 172
DTS + PH L+ +L T+HH LMA PS H A + I
Sbjct: 93 DTSSS--PHRLNNLL---TNHHLLMADPSISVAIHHAANFI 128
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = +1
Query: 334 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQ 513
NW +E + + + P LL EA + PK+ E Q +++TF + + +
Sbjct: 494 NWSYIEFVDNKDVLELIEKKPGGVIALLDEACMFPKSTHETFAQKLYQTFKNYKRFTKPK 553
Query: 514 AVLSLYAFGRTTGIV 558
+ +A G V
Sbjct: 554 LSRTSFAISHYAGEV 568
>At3g62490.1 68416.m07021 expressed protein hypothetical proteins -
Arabidopsis thaliana
Length = 559
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 418 TEAPLNPKANREKMTQIMFETFNTPAMYCRLQAVLSLYAFGRTTGIVLDLR 570
TEA +N + E ++ ++ TPA C A L+ FG G ++++R
Sbjct: 58 TEAEVNARLLHEDHVELHLDSVLTPAAICNFVAALT---FGAEEGYLVNVR 105
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = +1
Query: 334 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYCRLQ 513
+W +E + + + + P LL EA + PK+ E +++TF T + + +
Sbjct: 488 DWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPK 547
Query: 514 AVLSLYAFGRTTGIVL 561
+ +A G VL
Sbjct: 548 LSRTDFAVAHYAGEVL 563
>At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit,
putative similar to cellulose synthase-1 [gi:9622874]
and -2 [gi:9622876] from Zea mays
Length = 1081
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 417 H*GSPQPQGQQREDDPDHVRN 479
H GSP+ +G + EDD D + N
Sbjct: 91 HRGSPRVEGDEDEDDVDDIEN 111
>At3g11290.1 68416.m01373 expressed protein
Length = 460
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 220 GGAFPRSRGTRREEHHPPAKPALHIPEPLST 128
G A+ RS R +HH + P LH P PLST
Sbjct: 293 GKAYFRSYRRRVLDHHSES-PQLHDPTPLST 322
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -3
Query: 292 YLFCSCASSPT*DPSVPYRPSRPDGGAFPRSRGTRREEHHPPAKP 158
+LF S A+ P PS P+ FP S T H PPA P
Sbjct: 79 HLFSSVANPPPPPPSPPH-----PNPFFPSSDPTSTASHPPPAPP 118
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843
DIL domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 334 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 483
NW +E + + + + P LL EA + PK+ E Q M++T+
Sbjct: 480 NWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTY 529
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,355
Number of Sequences: 28952
Number of extensions: 355321
Number of successful extensions: 1068
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -