Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0554
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 1.7
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 2.2
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 2.9
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 3.9
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.1
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 5.1
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 6.8
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 9.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 9.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.0
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 9.0
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 379 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 507
YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 625 SHMTRFTNDSNELVYSLWMFMIGQ 554
SH +F ND E Y W F+ Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 507 GMNNEYRISLAKKGGGCPIMNIHS 578
G++NE I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 265 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 381
D ++ + W K + ++ W T E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 280 LTSWYRVSHANFFKKGKFLVFARS*KGIFGNHV 182
+ W+R+SH F++ FL++ IF H+
Sbjct: 556 MLKWFRLSHVLRFERLAFLLYENHFLEIFNRHL 588
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 17 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 160
P+ M + S P+ VY+ + L C NAK + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -2
Query: 486 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 388
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 71 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 199
Y+ Y L L K + K+ K + +H+ + W LLD +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 223 PKTYPF*RNSHVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ 363
P T + R+S + +T L ++ S K+F+RET+T + + P V D+
Sbjct: 1018 PATPSWTRDSSLIKETTNLNLD-SDKKFVRETYTSSNQTNEPDVYDK 1063
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 344 SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 439
SP+ R + + P SNP+ P SS++N
Sbjct: 964 SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 559 GQPPPFLARLILYSLFMPRRMAPQ 488
G PPP L+ Y + MP + PQ
Sbjct: 283 GSPPPMPIELLSYIINMPPPLLPQ 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,594
Number of Sequences: 5004
Number of extensions: 61354
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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