Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0554
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014) 33 0.14
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 33 0.25
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6) 29 2.3
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 5.4
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9) 28 7.1
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9) 28 7.1
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 27 9.4
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 27 9.4
>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
Length = 735
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 47 PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 196
PT RT+ D+K ++ L+K K + + +E E K+W L NYM AE
Sbjct: 87 PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 32.7 bits (71), Expect = 0.25
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = +1
Query: 139 RT*TRGEAMGSSRQLHGCRRSLFRTGQKPKTYPF*RNSHVKPDTMKLIVNWSGKEFLRET 318
R+ T G S+Q+ ++F+ G+K R +K + V W E RET
Sbjct: 123 RSNTENRFDGISKQMELLGATIFKDGKKAT-----REKALKKGIHLVTVLWV--ESCRET 175
Query: 319 WTRFVEDSFPIVNDQEVMDVYLVANLKPTR 408
R E+ FP++ E+ L+ LK T+
Sbjct: 176 GKRVAEELFPVIAQDELSTPLLMGKLKRTK 205
>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
Length = 416
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 218 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 75
CP + R + PC ++ P++ P +V S + + S C YC
Sbjct: 71 CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 28.7 bits (61), Expect = 4.1
Identities = 27/101 (26%), Positives = 42/101 (41%)
Frame = -2
Query: 510 CHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLN 331
CH G L + + P S S +++ +G C F G + + V G
Sbjct: 448 CHAGCLTQINGSLAECSCLLPSS--SRDIIT-MGKCRFSCGYKYGILLGAVFLFGFFTFM 504
Query: 330 KTGPSFTQKLFAAPVDD*LHGIGFHMRISLKRVSFWFLPGP 208
P+ T L PVD +G+GF M ++ R+ +PGP
Sbjct: 505 NMTPATTVTLRCLPVDRRTYGLGFQM--TMTRL-LGAIPGP 542
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 380 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 478
T S T P PT + +SS + GG KTT C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 389 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 475
P S H+P +T S+NT+L + CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 358 DQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVA*TTNTEL 531
D ++DV + KPT+ +C F + H+L ++ +V E +R++ + + TE+
Sbjct: 553 DSNILDVR--THFKPTKTFQCTHFSSCHSLSNKKGFVKGEGLRLLRTNSALASFKTEI 608
>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
Length = 279
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 74 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 184
D N C+ K + +HL VE++Q +K W DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205
>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
Length = 279
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 74 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 184
D N C+ K + +HL VE++Q +K W DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 274 KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLA 435
++++ S ++ RE W + PI + + + +L PTRPNR K +A
Sbjct: 115 RVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSLLPTRPNRTSKPIA 166
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 386 SPTSNPHAPTGATSSSLNTLLGGKKTTCPTK 478
S T P PT + +SS + GG KTT TK
Sbjct: 578 SRTRTPPTPTSSRASSRGSAGGGAKTTKTTK 608
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,616,127
Number of Sequences: 59808
Number of extensions: 469013
Number of successful extensions: 1580
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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