Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0554
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    32   0.29 
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    31   0.51 
U64848-9|AAB04887.1|  128|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z97191-2|CAB10025.1|  481|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   8.3  
EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha 1,2-fuc...    27   8.3  
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 281 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 460
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 461 TT-CPTK*SELWSHPT 505
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -2

Query: 489  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 313
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 312  TQKLFAAPVDD*LHGIGFHMRI 247
              +L A P+D  L  +   +RI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -2

Query: 489  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 313
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 312  TQKLFAAPVDD*LHGIGFHMRI 247
              +L A P+D  L  +   +RI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -2

Query: 489  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 313
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 312  TQKLFAAPVDD*LHGIGFHMRI 247
              +L A P+D  L  +   +RI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 592 ELVYSLWMFMIGQPPPFLARLILYSLFMPRRM 497
           E +  +W F+ G PPPF   +++   F+P+ +
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVPQML 182


>U64848-9|AAB04887.1|  128|Caenorhabditis elegans Hypothetical
           protein C50E3.3 protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 412 WGVWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLCRSS 287
           WGVW      GTR +  G  +   C    G KF+ KTL   S
Sbjct: 24  WGVWF----DGTRKTKCGPSELTQCNSLKGFKFNDKTLVSKS 61


>AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical
           protein F56D6.15 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 362 KR*WTCTSSPTSNPHA--PTGATSSSLNTLLGGKKT 463
           K  + C+  PT  P A  PT  T++++N  LGG++T
Sbjct: 113 KNYFVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 338 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPTK*SELWSHPT 505
           T +P  TT    T T++PT+    PT  T++ +  T +    TT PT  +   + PT
Sbjct: 179 TTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPT 235



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 338 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPT 475
           T +P  TT    T T++PT+   APT  T++ +  T      TT PT
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPT 218


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 26/75 (34%), Positives = 36/75 (48%)
 Frame = +2

Query: 281  SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 460
            S++G   S    L  + + T SP  +T+   T TS P+S+P   T + SSS  T +    
Sbjct: 1960 STSGTNPSSPRSLSQITI-TPSPSQSTES--TQTSLPSSSPSPSTHSVSSSEGTTMSSGA 2016

Query: 461  TTCPTK*SELWSHPT 505
            TT   K S L S  T
Sbjct: 2017 TTSGDKMSFLSSTGT 2031


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 417 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 301
           P G  G ++ + + +H +      +AV+N T PSF + L
Sbjct: 91  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 129


>Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical
           protein F08A8.5a protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 417 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 301
           P G  G ++ + + +H +      +AV+N T PSF + L
Sbjct: 72  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 110


>Z97191-2|CAB10025.1|  481|Caenorhabditis elegans Hypothetical
           protein H32K16.1 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 592 ELVYSLWMFMIGQPPPFLARLILYSLFMPRRM 497
           E V  +W F    PPPF   +++   F+P+ +
Sbjct: 179 EHVIEIWEFFADSPPPFSKCVMILMYFVPQML 210


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 173 EDPIASPLVHVRLGASCAWRF**DSPSFCN 84
           E PI S  V  R G SC +     SP FCN
Sbjct: 647 ECPIGSVEVDPRFGTSCRYSLQCPSPYFCN 676


>EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha
           1,2-fucosyltransferase protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 417 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 301
           P G  G ++ + + +H +      +AV+N T PSF + L
Sbjct: 72  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 110


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 17  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVE 142
           PI+ P ++  P + ++ V +   YKN  CL K +K  + LV+
Sbjct: 2   PISEPTWAELPFLFKSAVVELLPYKNRCCLRKCSKSDQFLVD 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,847,058
Number of Sequences: 27780
Number of extensions: 352744
Number of successful extensions: 1120
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)