Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0554
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   2.5  
At1g56600.1 68414.m06509 galactinol synthase, putative similar t...    29   3.3  
At1g60470.1 68414.m06808 galactinol synthase, putative similar t...    28   4.4  
At2g12130.1 68415.m01306 hypothetical protein                          28   5.8  
At1g43245.1 68414.m04985 expressed protein                             28   5.8  

>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -2

Query: 516 CSCHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYN 349
           C C   W H   Y +G+    P K    E  + P     F  G  V+   L   YN
Sbjct: 139 CFCEKTWSHTPQYKIGYCQQCPDKVTWPESELGPKPPLYFNAGMFVYEPSLPTYYN 194


>At1g56600.1 68414.m06509 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 335

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -2

Query: 516 CSCHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYN 349
           C C   W H+  Y +G+    P K    E  + P     F  G  V+  +L   +N
Sbjct: 145 CFCEKTWSHSPQYKIGYCQQCPDKVTWPEAKLGPKPPLYFNAGMFVYEPNLSTYHN 200


>At1g60470.1 68414.m06808 galactinol synthase, putative similar to
           galactinol synthase GI:5608497 from [Ajuga reptans]
          Length = 334

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 516 CSCHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 388
           C C   W H+  Y +G+    P K    E++ +P     F  G
Sbjct: 146 CFCEKTWSHSLQYSIGYCQQCPEKVTWPEDMESPPPPLYFNAG 188


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 406 VWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLC 296
           +W   WR    P  LGR  +G+C +     ++A+ LC
Sbjct: 170 LWNRSWRFVVSPDCLGRCSYGACCRNCFFYWYARELC 206


>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 361 QEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVA 510
           QE +D +L  N+ P       + +  H ++++ED  PH  +R+    YVA
Sbjct: 321 QEAIDDFLSDNIDPKTCCEMIESVLHHGIQFKEDSQPH-CLRLHACHYVA 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,768
Number of Sequences: 28952
Number of extensions: 327517
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)