Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0553
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27219| Best HMM Match : Cad (HMM E-Value=4) 29 1.8
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_28831| Best HMM Match : GCK (HMM E-Value=3.1) 27 5.4
SB_37237| Best HMM Match : Oxidored_q1_N (HMM E-Value=9.9) 27 7.2
SB_19153| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 26 9.5
>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
Length = 297
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY +Y++ T+ +VYY + ++ +V+ +N
Sbjct: 45 YYSIDVYYSVTVYYSINVYYSVNVYYSINVYYSIN 79
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY I ++ +V+ VN
Sbjct: 51 YYSVTVYYSINVYYSVNVYYSINVYYSINVYYSVN 85
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY I ++ +V+ VN
Sbjct: 57 YYSINVYYSVNVYYSINVYYSINVYYSVNVYYSVN 91
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ VN
Sbjct: 69 YYSINVYYSINVYYSVNVYYSVNVYYSVNVYYSVN 103
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ VN
Sbjct: 81 YYSVNVYYSVNVYYSVNVYYSVNVYYSINVYYSVN 115
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY I ++ +V+ VN
Sbjct: 87 YYSVNVYYSVNVYYSVNVYYSINVYYSVNVYYSVN 121
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ VN
Sbjct: 105 YYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSVN 139
Score = 27.1 bits (57), Expect = 5.4
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ +N
Sbjct: 75 YYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSIN 109
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ VN
Sbjct: 99 YYSVNVYYSINVYYSVNVYYSVNVYYSVNVYYSVN 133
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY +Y++ + +VYY I ++ +V+ +N
Sbjct: 39 YYSIDVYYSIDVYYSVTVYYSINVYYSVNVYYSIN 73
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ VN
Sbjct: 63 YYSVNVYYSINVYYSINVYYSVNVYYSVNVYYSVN 97
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ VN
Sbjct: 93 YYSVNVYYSVNVYYSINVYYSVNVYYSVNVYYSVN 127
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + +VYY + ++ +V+ +N
Sbjct: 117 YYSVNVYYSVNVYYSVNVYYSVNVYYSVTVYYSIN 151
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + VYY I ++ +V+ +N
Sbjct: 27 YYSINVYYSVNVYYSIDVYYSIDVYYSVTVYYSIN 61
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICVN 292
YY ++Y++ + VYY + ++ +V+ VN
Sbjct: 33 YYSVNVYYSIDVYYSIDVYYSVTVYYSINVYYSVN 67
>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 143 YSKKHSLKHTDSMYRYYPFSLYFTYTINLDTSVYYCIYMFKVFSVH 280
Y +L + Y + S++FTY SV+Y Y + SVH
Sbjct: 454 YCTTRTLSVHYTYYTTHTLSVHFTYYTTRTKSVHYTYYTTRTLSVH 499
>SB_28831| Best HMM Match : GCK (HMM E-Value=3.1)
Length = 320
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 137 IIYSKKHSLKHTDSMYRYYP 196
++Y+KK SL+ +YRYYP
Sbjct: 295 LVYNKKGSLEVLMCLYRYYP 314
>SB_37237| Best HMM Match : Oxidored_q1_N (HMM E-Value=9.9)
Length = 62
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SLKHTDSMYRYYPFSLYFTYTINLDTSVYYCI 253
S++ + S + Y SLYF+Y +N+ S Y+C+
Sbjct: 15 SIEISISTHLYAVISLYFSYEVNI--SHYFCL 44
>SB_19153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 125 KFNSIIYSKKHSLKHTDSMYRYYPFS 202
K N +IY K ++H+ + Y PF+
Sbjct: 130 KNNEVIYPKSEFIRHSSGKWYYLPFT 155
>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
Length = 435
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 182 YRYYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICV 289
YR FS FTY I L Y I+ +F+ IC+
Sbjct: 122 YRNIHFSPLFTYLIRLYPISYRTIHFSPLFTYLICL 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,625,817
Number of Sequences: 59808
Number of extensions: 136706
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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