Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0553
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    33   0.071
AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin prote...    29   0.88 
AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin prote...    29   0.88 
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    27   6.2  
AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 33.1 bits (72), Expect = 0.071
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 92  SSLIT*LCNKIKFNSIIYSKKHSLKHTDSMYRYYPFSLYFTYTINLDTSVYYC-IYMFKV 268
           S L+  +CN   F  +I+    S+ ++  ++ YYP  L+F Y + L T    C +Y+  +
Sbjct: 126 SDLVLLVCN---FFMLIFPVIASMSNSYLLHDYYPVFLWFAYPVGLSTQT--CGVYLTVL 180

Query: 269 FSVH 280
            SVH
Sbjct: 181 VSVH 184


>AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin protein
           19, isoform b protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 177 QCTDIIHSHFTLPTQLISIPQYIIVYTCLKFFQYIF 284
           QC  I+HS   L   +  + Q++I+  CLK   ++F
Sbjct: 195 QCLSILHSFTKLLYSMNVVAQFLILNACLKSSDFLF 230


>AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin protein
           19, isoform a protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 177 QCTDIIHSHFTLPTQLISIPQYIIVYTCLKFFQYIF 284
           QC  I+HS   L   +  + Q++I+  CLK   ++F
Sbjct: 211 QCLSILHSFTKLLYSMNVVAQFLILNACLKSSDFLF 246


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 174 IQCTDIIHSHFTLPTQLISIPQYIIVYTCLKFFQYIFVSIN 296
           I C  II S FT  TQL+     I ++TCL    Y  V  N
Sbjct: 375 IYCLTIISSEFTHNTQLLP----IFIFTCLVVLSYYGVFFN 411


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 134 SIIYSKKHSLKHTDSMYRYYPFSLYFTYTINLDTSVYY 247
           SI Y K+  +  + + + Y+ FS+   YT+NL T ++Y
Sbjct: 29  SIFYQKRIPINQSMT-FIYWKFSVDVVYTLNLTTLMFY 65


>U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical
           protein F26A10.2 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 113 CNKIKFNSIIYSKKHSLKHTDSMYRYYPFSLYFTY-TINLDTSVY 244
           C K+ FNS+ Y K+H++KH++      PF   F + T    +++Y
Sbjct: 53  CGKL-FNSVWYLKQHAVKHSNDR----PFKCKFCFKTYKFRSNLY 92


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 222 LISIPQYIIVYTCLKFFQYIFVSIN 296
           ++S+P Y++V+ CL   +Y+  + N
Sbjct: 24  IVSLPLYLVVFVCLLRLRYVSKTYN 48


>AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical
           protein T23E7.2d protein.
          Length = 118

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 YYPFSLYFTYTINLDTSVYY 247
           YYPF LY  YT++L T   Y
Sbjct: 27  YYPFYLYNVYTLSLITKSPY 46


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 188 YYPFSLYFTYTINLDTSVYYCIYMFKVFS 274
           YY + +Y  YTI     +Y+  Y++ +++
Sbjct: 23  YYIYHIYIPYTIYTIHQIYHIYYIYHIYT 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,810,327
Number of Sequences: 27780
Number of extensions: 118203
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)