Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0553
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   2.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.9  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +2

Query: 137 IIYSKKHSLKHTDSMYRYYPFSLYFTYTINLDTSVYYCIYMFKVFSVHICV 289
           II S  +   H ++ Y+Y   + Y     N +  +YY  Y+  +  + + V
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPV 131


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 128 FNSIIYSKKHSLKHTDSMYRYYPFSLYFTYTINLDT 235
           F  ++Y  ++S     +   +YP+  Y T+ I  DT
Sbjct: 206 FALLVYDFRNSRSWRITNNLFYPYPPYGTFNIKGDT 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,659
Number of Sequences: 438
Number of extensions: 1823
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)