Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0553
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13400.1 68418.m01543 proton-dependent oligopeptide transport...    27   3.4  
At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containi...    27   3.4  
At5g46110.2 68418.m05670 phosphate/triose-phosphate translocator...    27   4.5  
At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator...    27   4.5  
At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearl...    27   5.9  
At1g03180.1 68414.m00295 hypothetical protein                          26   7.8  

>At5g13400.1 68418.m01543 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 624

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 151 FAINNRIKLNFVTKSSDQRAVFILIQF 71
           +AI N  + NF+T+  D  A ++LIQ+
Sbjct: 483 YAIQNGFEFNFLTQMPDLTAYWLLIQY 509


>At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 284 KYVLKKL*TCIYNNILRYRD*LCR*SKVRMDNICTLNQYV--SVNVFCYK 141
           +Y    L T +Y    RY D L     +R +N+C LN+Y+  +  V C K
Sbjct: 354 EYTWNALLTALYK-ANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQK 402


>At5g46110.2 68418.m05670 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 297

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 179 MYRYYPFSLYFTYTINLDTSVYYCIYMFKV 268
           +Y Y+P+  YF   I+L   V YC+  + V
Sbjct: 16  IYNYFPYP-YFVSVIHLFVGVVYCLISWSV 44


>At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 410

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 179 MYRYYPFSLYFTYTINLDTSVYYCIYMFKV 268
           +Y Y+P+  YF   I+L   V YC+  + V
Sbjct: 129 IYNYFPYP-YFVSVIHLFVGVVYCLISWSV 157


>At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearly
           identical to acyl-activating enzyme 17 [Arabidopsis
           thaliana] GI:29893266; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-activating enzyme 17 (At5g23050) GI:29893265
          Length = 721

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 102 SLDFVTKLSLILLFIAKNIH*NILIQCTDIIHSHFTLPTQLISIPQYII 248
           SL+ +TK  +  L I+ ++   +L    DIIH   T P   I I + I+
Sbjct: 5   SLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSSTPPETWIQISRRIL 53


>At1g03180.1 68414.m00295 hypothetical protein
          Length = 275

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 116 NKIKFNSIIYSKKHSLKHTDSMYRYYPFSLYFTYTINLDTSVYYCI 253
           +K++F         +   T+ +  Y+ +S + +YT+N   ++ YC+
Sbjct: 222 SKLRFKCRTQDNATNSPPTNDLIWYFSYSQFSSYTLNKFLTMPYCV 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,062,217
Number of Sequences: 28952
Number of extensions: 96206
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)