Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0551
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43) 34 0.087
SB_29032| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12) 34 0.087
SB_38660| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9) 29 3.3
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92) 29 4.3
SB_26113| Best HMM Match : CcmD (HMM E-Value=6.7) 29 4.3
SB_50274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_58865| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-13) 28 5.7
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 28 5.7
SB_22094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 28 7.5
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 28 7.5
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 27 9.9
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43)
Length = 677
Score = 34.3 bits (75), Expect = 0.087
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +3
Query: 186 LCAYVALTSAQFGYG----GFADFGSSLVVTSTTFRPLPEIRGRILVRCCFPPRRPVTPR 353
+C+Y A+ YG D G +V ++RPL ++ +RC FPP+
Sbjct: 7 VCSYRLKVMAKLAYGQTPGATLDSGRGCLVPLDSYRPL-KLGSPQSIRC-FPPQSACFAG 64
Query: 354 -RQAEWWSVLPDMGSCPPAPKVKPTDDEWPSQIVVRTNLST 473
+ E W D + +PK K ++ +WP+ I+ N+ T
Sbjct: 65 VSRTEVWKQT-DKWTATTSPKKKGSNTKWPALIIGSWNVRT 104
>SB_29032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 34.3 bits (75), Expect = 0.087
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +3
Query: 186 LCAYVALTSAQFGYG----GFADFGSSLVVTSTTFRPLPEIRGRILVRCCFPPRRPVTPR 353
+C+Y A+ YG D G +V ++RPL ++ +RC FPP+
Sbjct: 7 VCSYRLKVMAKLAYGQTPGATLDSGRGCLVPLDSYRPL-KLGSPQSIRC-FPPQSACFAG 64
Query: 354 -RQAEWWSVLPDMGSCPPAPKVKPTDDEWPSQIVVRTNLST 473
+ E W D + +PK K ++ +WP+ I+ N+ T
Sbjct: 65 VSRTEVWKQT-DKWTATTSPKKKGSNTKWPALIIGSWNVRT 104
>SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12)
Length = 548
Score = 34.3 bits (75), Expect = 0.087
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +3
Query: 186 LCAYVALTSAQFGYG----GFADFGSSLVVTSTTFRPLPEIRGRILVRCCFPPRRPVTPR 353
+C+Y A+ YG D G +V ++RPL ++ +RC FPP+
Sbjct: 7 VCSYRLKVMAKLAYGQTPGATLDSGRGCLVPLDSYRPL-KLGSPQSIRC-FPPQSACFAG 64
Query: 354 -RQAEWWSVLPDMGSCPPAPKVKPTDDEWPSQIVVRTNLST 473
+ E W D + +PK K ++ +WP+ I+ N+ T
Sbjct: 65 VSRTEVWKQT-DKWTATTSPKKKGSNTKWPALIIGSWNVRT 104
>SB_38660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -3
Query: 426 P*ALPWEPGGTNPYPEAPTTTPLVCE---GSPAGEGGNSTGPGFALGS 292
P + P +PG N E+P +TP C GS G G +GPG + G+
Sbjct: 53 PKSTPTDPGTRNDTEESPKSTPRKCAIPWGSFRGLLGIVSGPGISWGT 100
>SB_28303| Best HMM Match : DUF1168 (HMM E-Value=1.9)
Length = 304
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 426 P*ALPWEPGGTNPYPEAPTTTPLVCEGSPAG--EG-GNSTGPGFALG 295
P + P +PG N E+P +TP C G G G G +GPG G
Sbjct: 15 PKSTPTDPGTRNDTEESPKSTPRKCVGVLLGIVSGPGIVSGPGIISG 61
>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
Length = 270
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 426 P*ALPWEPGGTNPYPEAPTTTPLVCEGSP 340
P + P +PG N E+P +TP C SP
Sbjct: 15 PKSTPTDPGTRNDTEESPKSTPRKCVSSP 43
>SB_26113| Best HMM Match : CcmD (HMM E-Value=6.7)
Length = 198
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 373 DHHSACLRGVTGRRGGKQHRTRIRPRISGSGRKV 272
D H+ + G+ RGG+Q + P G GRKV
Sbjct: 153 DGHAGTMGGMWRSRGGRQEIAKNAPACFGRGRKV 186
>SB_50274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 375 PTTTPLVCEGSPAGEGGNSTGPGFALGS 292
P +TP GSPA GGNS+G ++G+
Sbjct: 270 PGSTPTYQGGSPAYHGGNSSGNISSIGN 297
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPG 307
PGGT P T P G+ A GG +T PG
Sbjct: 757 PGGTTAAPGGTTAAP---GGTTAAPGGTTTAPG 786
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPG 307
PGGT P TT P G+ A GG + PG
Sbjct: 771 PGGTTAAPGGTTTAP---GGTTAAPGGTTAAPG 800
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSP-AGEGGNST 316
PGGT PE T P SP A GN T
Sbjct: 820 PGGTTTAPEGTTAAPAATTESPTASPSGNGT 850
>SB_58865| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-13)
Length = 325
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 557 FFVCTLN*LVIFVVILYRFFR 619
FFVC N +++FV+I Y FR
Sbjct: 13 FFVCAANLVLVFVIITYYDFR 33
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 257 GGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVG 376
GG N AA +PR PGP+ PP+ G P+ + G
Sbjct: 2502 GGQMNAGHAAMVNPRF-PGPIQRPPAAIGAPTMAQVMTQG 2540
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 617 EKIYTELQQKLLANSTCKQKNKYKHCNSSLARNYNYFVLRRTVH 486
E I T + KL +S Y ++ ARNY Y+ R T+H
Sbjct: 218 ETINTTIHAKLYTDSEKLSILLYTRNSTRTARNYQYYNTRETLH 261
>SB_22094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -2
Query: 562 KKINTNIAILV*QEIITILY*EEQFTVTARVERLVLTTI*LGHSSSVGFTLGAGGHEPIS 383
K +N +++L+ Q LY + + A + L L S G +G+ GH ++
Sbjct: 129 KALNDAVSVLIRQRAPNQLYKRQDLFLYAMINANSL----LQQSKETGLRVGSVGHRKLA 184
Query: 382 GSTD 371
G+TD
Sbjct: 185 GTTD 188
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/99 (20%), Positives = 42/99 (42%)
Frame = -1
Query: 548 KHCNSSLARNYNYFVLRRTVHCYSTCREISSNYNLTRPFIVRRLYLGSRGARTHIRKHRP 369
++ + S +R+ ++ V R S R S +++ +R + R G+R+ R H P
Sbjct: 230 RNSSRSASRSQSHSVSRSRSKSLSQSRSRSQSHSASRS-VSRSRSRSRSGSRSRTRSHSP 288
Query: 368 PLRLSARGHRPARGETAPDQDSPSDLWQRPKGS*SYHQT 252
S P++ P +S + ++ + S H +
Sbjct: 289 SDHSSVGSRSPSKQPQTPPHESGKEESKKTSPASSAHSS 327
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 335 PAGDPSQTSGVVVGASGYGFVPPGSQGKAYGR 430
P+ P Q +G V GASG G G QG R
Sbjct: 3505 PSEGPGQGTGHVSGASGAGHAGTGGQGYGTSR 3536
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 335 PAGDPSQTSGVVVGASGYGFVPPGSQGKAYGR 430
P+ P Q +G V GASG G G QG R
Sbjct: 49 PSEGPGQGTGHVSGASGAGHAGTGGQGYGTSR 80
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 2 PEGNSASPEGNSTSP---EGNSASPEGNSTSP 30
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 16 PEGNSASPEGNSTSP---EGNSASPEGNSTSP 44
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 76 PEGNSASPEGNSTSP---EGNSASPEGNSTSP 104
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 167 PEGNSTSPEGNSTSP---EGNSASPEGNSTSP 195
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 188 PEGNSTSPEGNSTSP---EGNSASPEGNSTSP 216
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 202 PEGNSASPEGNSTSP---EGNSASPEGNSTSP 230
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 310
P G + PE +T+P EG+ A GNST P
Sbjct: 216 PEGNSASPEGNSTSP---EGNSASPEGNSTSP 244
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 296 PRANPGPVLFPPSPA-GDPSQTSGVVVGASGYGFVPPGSQ 412
P ++P +PPS + G ++ V+ G S G PPGS+
Sbjct: 108 PASHPNSAQYPPSSSFGANMPSNQVLNGPSSRGTPPPGSR 147
>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 279 RPLPEIRGRILVRCCFPPRRPVT--PRRQAEWWSVL--PDMGSCPPAPKVK 419
RPLP++ + ++ PP RP + P +++E S L P PP+P+ K
Sbjct: 170 RPLPQLPKKNGLQANTPPPRPASPLPPKKSEQGSELGRPPSKPLPPSPRSK 220
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -3
Query: 402 GGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAAAER 274
GGT+ APT P + G GG G G A E+
Sbjct: 554 GGTSGVSTAPTAVPTTSSATSGGGGGRRVKKGQGGGGRGAEEQ 596
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,995,619
Number of Sequences: 59808
Number of extensions: 526200
Number of successful extensions: 2034
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2029
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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