Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0551
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    31   0.93 
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    30   1.6  
AL032637-3|CAA21617.1|   90|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin (cae...    29   2.1  
Z74472-8|CAD54135.1|   75|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin (cae...    29   3.8  
AF039046-3|ABP57815.1|   51|Caenorhabditis elegans Caenacin (cae...    29   3.8  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    28   5.0  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80  HPPLG-HSACAPQVKLCQCPST*NTQHEFIRENRSCIVRLC 199
           +PPL   S  AP +KL    S  N +HE IR  ++   RLC
Sbjct: 110 NPPLRKRSGSAPSIKLITLASIWNLKHEHIRALKTTWARLC 150


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 326 PPSPAGDPSQTSGVVVGASGYGFVPPGSQG 415
           PP PAG P           GYG  PPG  G
Sbjct: 257 PPGPAGPPGPPGNNGAPGGGYGVGPPGPPG 286


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 140 T*NTQHEFIRENRSCIVRLCSAYLSP 217
           T N  ++FIR N+SC+ R CS   SP
Sbjct: 674 TGNNMNDFIRFNKSCVPRQCSHIGSP 699


>AL032637-3|CAA21617.1|   90|Caenorhabditis elegans Hypothetical
           protein Y43F8C.2 protein.
          Length = 90

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 156 MNSYVKIALVLCAYVALTSAQFGYGGFADFG 248
           MN +V  +L+L   V L SAQFG+GG   FG
Sbjct: 1   MNFFVIFSLLL---VGLVSAQFGFGGQQSFG 28


>AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 4 protein.
          Length = 66

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 174 IALVLCAYVALTSAQFGYGGFADFG 248
           I ++L A +A++SAQ+GYG +  +G
Sbjct: 5   ILVLLVAIIAMSSAQWGYGPYGGYG 29


>Z74472-8|CAD54135.1|   75|Caenorhabditis elegans Hypothetical
           protein F23H12.8 protein.
          Length = 75

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
 Frame = +3

Query: 180 LVLCAYVALTSAQ---FGYGGF 236
           LV+CA+VA T AQ   +GYGG+
Sbjct: 12  LVICAFVAETDAQYYGYGYGGY 33


>AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 2 protein.
          Length = 72

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 174 IALVLCAYVALTSAQFGYGGF 236
           I ++L A +A ++AQ+GYGG+
Sbjct: 5   ILILLVALIAFSTAQYGYGGY 25


>AF039046-3|ABP57815.1|   51|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 11 protein.
          Length = 51

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 174 IALVLCAYVALTSAQFGYGGFADFGSSL 257
           I L+L A +AL+SAQ+GYG    +G+ +
Sbjct: 5   IILLLVALLALSSAQYGYGYNYGYGAPM 32


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 17  PPATQHIPEWAVFQIGVSQLAHPPLGHSACAPQVKLCQCPST*NTQHEFIRENRS 181
           PP   H P +   +I  SQ  HPP  H     + +     +   TQ+ F + N S
Sbjct: 72  PPKPLHQPSYLPLEISTSQHHHPPHHHPTQFQRGQSLALSNPIPTQNAFWQHNNS 126


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 296  PRANPGPVLFPPSPAG--DPSQTS 361
            P+ NPGP   PPSP G  DP++ S
Sbjct: 936  PKPNPGPGPGPPSPNGPSDPNKPS 959


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 296 PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQG 415
           P   PGP   PP PAG+  Q      G +G    PPG  G
Sbjct: 240 PPGPPGPA-GPPGPAGNAGQAGYAQPGPAG----PPGDAG 274


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 363 PLVCEGSPAGEGGNSTGPGFALGSLAAAER*LKLP 259
           PL    SPA  GG   G GF +G  A      +LP
Sbjct: 443 PLYTSASPAFGGGGGMGGGFGMGGSAHTSSFHQLP 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,274
Number of Sequences: 27780
Number of extensions: 384458
Number of successful extensions: 1387
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)