Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0550
         (618 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59KL8 Cluster: Putative uncharacterized protein RLR1; ...    35   1.4  
UniRef50_A0CCV5 Cluster: Chromosome undetermined scaffold_169, w...    33   5.5  
UniRef50_Q4CSC1 Cluster: Putative uncharacterized protein; n=2; ...    32   9.5  

>UniRef50_Q59KL8 Cluster: Putative uncharacterized protein RLR1;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein RLR1 - Candida albicans (Yeast)
          Length = 1608

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 385 YFSALKSSSVAGLNIHSALIFIFRDNKIRASNIAIH 492
           +F  L S +V+  NIH  L  +FRDNKI+   +A+H
Sbjct: 78  FFQVLNSFAVSK-NIHDLLHLLFRDNKIKIETLALH 112


>UniRef50_A0CCV5 Cluster: Chromosome undetermined scaffold_169, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_169, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2328

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 232  IMSISVTKRLHCLLLFVNVCFSLIGILEIRFVFPRVY*IFXXXXXXXXXHNYFSALKSSS 411
            ++ +  T+ L  +++ +N+ F+ +GIL I  VF R+Y            +  FS   SS 
Sbjct: 2120 VLQLKYTRNLDFVIIIINIAFAYLGILFIVTVF-RLYKFVCSQHPILYENKQFSYYYSSL 2178

Query: 412  VAGLNIHSAL 441
              G+N +  L
Sbjct: 2179 YEGINTNKNL 2188


>UniRef50_Q4CSC1 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 233

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 583 VRYFYIGVIIVSLSKKFELFILVSNITVWHNVWQY*MRGFCYL 455
           VR+  IGV ++   K F LF L+ ++T+    W+   +GFC++
Sbjct: 89  VRFIIIGVGLLFFFKDFPLF-LIESVTLRRYGWRNGFQGFCFI 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,441,393
Number of Sequences: 1657284
Number of extensions: 9182351
Number of successful extensions: 15920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15915
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)