Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0550
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   3.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.3  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 169 KLHWPFDCRVGHRCPTRRTEVIMSISVTKRLHCLLLF--VNVCFSLIGIL 312
           KL W F  R GH C     + I++  ++ R H    +  +N C S + +L
Sbjct: 58  KLWWEFCQRNGHNCLDFTVQNILTF-LSCRFHQGASYNTLNTCRSALALL 106


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 242 FLLLSASIAFYCLLMYVL 295
           F++ +  + FYC+L+ +L
Sbjct: 219 FIIFTIHLLFYCVLIILL 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,718
Number of Sequences: 336
Number of extensions: 2565
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)