Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0550
         (618 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1110|AAN12092.3|  406|Drosophila melanogaster CG32402-P...    31   1.2  
M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger ho...    29   5.0  
AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA p...    29   5.0  
AE014296-1111|AAN12093.2|  410|Drosophila melanogaster CG32403-P...    29   6.6  

>AE014296-1110|AAN12092.3|  406|Drosophila melanogaster CG32402-PA
           protein.
          Length = 406

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +1

Query: 451 FRDNKIRASNIAIHYARQ*YLRQG*KAQIFLTGKLLLLRYKSTLHTLAFIQL 606
           +RD  + AS+ +I+Y R+    Q     +F T +  LL Y+S  HTL +IQ+
Sbjct: 17  YRDPLMEASHSSIYYWRE----QMKAMALFTTTEERLLPYRSKWHTLVYIQM 64


>M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger
           homeodomain protein 2 protein.
          Length = 3005

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 207 PVTYTTVKGPMQFFSCIICEVFLTS 133
           P+T T  K PM F+SC++C+ + T+
Sbjct: 885 PLTKTD-KWPMAFYSCLVCDCYSTN 908


>AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA
           protein.
          Length = 3005

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 207 PVTYTTVKGPMQFFSCIICEVFLTS 133
           P+T T  K PM F+SC++C+ + T+
Sbjct: 885 PLTKTD-KWPMAFYSCLVCDCYSTN 908


>AE014296-1111|AAN12093.2|  410|Drosophila melanogaster CG32403-PA
           protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 451 FRDNKIRASNIAIHYARQ*YLRQG*KAQIFLTGKLLLLRYKSTLHTLAFIQLT 609
           FRD  + +S  A++Y R+    Q     ++ T K   + Y+S+ HTL  IQ T
Sbjct: 21  FRDPTMESSYSAVYYWRE----QMKAMFLYTTSKERQMPYRSSWHTLVIIQAT 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,412,078
Number of Sequences: 53049
Number of extensions: 425941
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)