Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0550
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    27   8.1  

>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 556 IVSLSKKFELFILVSNITVWH 494
           +VSL+KKFE+  LV +   WH
Sbjct: 852 VVSLNKKFEVIHLVRHFNAWH 872


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 483 CHTLCQTVIFET 518
           CHTLC+T+IFE+
Sbjct: 293 CHTLCRTLIFES 304


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 483 CHTLCQTVIFET 518
           CHTLC+T+IFE+
Sbjct: 359 CHTLCRTLIFES 370


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 233 LCRFLLLSASIAFYCLLMYVLVS*ES*KYD 322
           LC+F +++ ++ FY  L Y ++  +  K+D
Sbjct: 14  LCQFAIVTVTVPFYLFLWYFMIKAQFRKFD 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,527
Number of Sequences: 27780
Number of extensions: 233258
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)