Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0550
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 385 YFSALKSSSVAGL--NIHSALIFIFRDNKIRASNIAIHYARQ*Y 510
           Y   +KS+    L  ++H  L F + D +++ SNIA  Y  Q Y
Sbjct: 46  YIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSNIA-PYLNQIY 88


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 611 WVNCMNAKVCKVLLYRSNNSFPVKKI*AFYPC 516
           W+NC++  + K+ L+ + +    ++I   Y C
Sbjct: 592 WINCLDPNLPKLALFATKDIKQNEEITFDYMC 623


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 400 KSSSVAGLNIHSALIFIFRDNKIRASNIAIH 492
           KS  V  +N    LIF   +    ASNI +H
Sbjct: 415 KSGKVDVINAAKELIFQIANELEDASNIPVH 445


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -2

Query: 617 FKWVNCMNAKVCKVLLYRSNNSFPVKKI*AFYPCLKY 507
           F W   +N+     ++Y +  +FP +   +  P  KY
Sbjct: 287 FDWNKPINSGFYSTIMYSNGVTFPQRNRFSSLPYYKY 323


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -2

Query: 617 FKWVNCMNAKVCKVLLYRSNNSFPVKKI*AFYPCLKY 507
           F W   +N+     ++Y +  +FP +   +  P  KY
Sbjct: 287 FDWNKPINSGFYSTIMYSNGVTFPQRNRFSSLPYYKY 323


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 246 RNRHNYFSAPRRAPVTYTTV 187
           RNR  Y +A  R P TY ++
Sbjct: 493 RNREFYKNADVRPPFTYASL 512


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 335 LGKTNRISKIPMRLKHT 285
           L KTNRIS+I    KH+
Sbjct: 740 LTKTNRISRIFNASKHS 756


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,770
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)