Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0549
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.063
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 29 0.45
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.59
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 29 0.78
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.78
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 29 0.78
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 1.4
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.4
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 1.8
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 27 1.8
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 1.8
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 3.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 27 3.1
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 4.2
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 4.2
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 4.2
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 5.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.3
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.3
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.6
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 9.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 9.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.6
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 25 9.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.063
Identities = 23/87 (26%), Positives = 34/87 (39%)
Frame = +3
Query: 261 KQFQSSKIKTPLKQHKLKPAPMVFTSSPPSL**TRGATAPPPLPPSTGETGSSETQPALD 440
K + + TP P + +S PP + A APPP+PP + T SS P
Sbjct: 214 KAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSS--PPNSP 271
Query: 441 KTPHNPTAKRSPIQAKNRDRSPQNRQR 521
P P + I + ++ P R
Sbjct: 272 PRPIAPVSMNPAINSTSKPPLPPPSSR 298
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 321 PMVFTSSPPSL**TRGATAPPPLPPS 398
P + S+PPSL GA A PPLPPS
Sbjct: 429 PSLPPSAPPSL--PMGAPAAPPLPPS 452
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 363 RGATAPPPLPP-STGETGSSETQPALDKTPHNPTAKRSPIQAKNRDRSP 506
+G +APPP PP S TG + + NP A I ++ P
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 378 PPPLPPSTGETGSSETQPALDKTPHNPTAKRSP 476
PPP PP + GS P P P + +P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.5 bits (63), Expect = 0.45
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 10/162 (6%)
Frame = +2
Query: 35 LPLPRVHALRPDHPQVQLVVLRRLQEHQEVVRHQHSSVQELSAHEGPDLLLFIQEGQQHA 214
+P H DH + V L L + + + S+ LS P LLL + + +
Sbjct: 162 VPTASAHISSSDHEKSSSVSLSALNNYNKTTDIKARSLDRLSDMTRPKLLLNTKRSHRSS 221
Query: 215 RR----WSLTKP*RRGRIKEAISILENQD-TTKTAQTETGS--DGLHIITPQPL-IDERS 370
+T P + KE I L N+ T + TE+ D + PL ++ S
Sbjct: 222 EEPGASSPVTSPILKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDNLSPLSLNTSS 281
Query: 371 NR--ATPPAPVYRGDRQLGNTTRSGQNSTQPHSQTVADSSQE 490
R T P P + D + + ++ Q H + D ++
Sbjct: 282 FRRPITKPTP-FNSDSNISIDPKDNNSNKQDHFAEIEDELRQ 322
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 315 PAPMVFTSSPPSL**TRGATAPPPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQAKNR 494
P+ V T+ P R + L + G + QP+L KTP +P +KR+P +NR
Sbjct: 22 PSSPVSTNGSPLNNLVRSRLSDGALNFTGGRIATPLPQPSL-KTPESPLSKRNPTIKQNR 80
Query: 495 DR 500
R
Sbjct: 81 VR 82
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 28.7 bits (61), Expect = 0.78
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +1
Query: 571 STKAPSVSTTHAVEVIQQE--IQPDRKPE 651
+T+AP VSTTH V ++E ++ D +PE
Sbjct: 183 NTEAPKVSTTHIVRATEEEEWVELDCRPE 211
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 0.78
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = +3
Query: 315 PAPMVFTSSPPSL**TRGATAPPPL------PPSTGETGSSETQPALDKTPHNPTAKRSP 476
P T+S P++ A+ PPP PP+ T Q P+ P A +SP
Sbjct: 911 PPTASMTASAPAI-----ASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSP 965
Query: 477 IQAKNRDRSPQN 512
+ A +R S N
Sbjct: 966 VAAASRISSSPN 977
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +3
Query: 315 PAPMVFTSSPPSL**TRGATAPPPLPPSTGETGS-----SETQPALDKTPHNPTAKRSPI 479
P P ++ P ++ T + PP PP+ T S S P + +T H PTA + +
Sbjct: 886 PFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRV 945
Query: 480 QAKNRDRSP 506
+ P
Sbjct: 946 PPVQQPSHP 954
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.78
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +3
Query: 228 SPNPEDVDGLKKQFQSSKIKTPLKQHKLKPAPMVFTSSPPSL**TRGATAPPPLPPSTGE 407
SP+ D K+Q S + P H +KP+ F S R +++PPP+P E
Sbjct: 149 SPSANRNDS-KRQASSFRRSPPSSVH-MKPS--AFNGRKVS---RRPSSSPPPIPSIPHE 201
Query: 408 TGSSETQ 428
T SS+TQ
Sbjct: 202 TTSSDTQ 208
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 1.4
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Frame = +3
Query: 228 SPNPEDVDGLKKQFQSSKIKTPLKQHKLKPAPMVFTSSPPSL**TRGATAPPPLPPSTGE 407
+P P S +KT +P+P+V + S ++ + P ST E
Sbjct: 257 APTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTDNIIRSHSPVLLTPQTLSTSE 316
Query: 408 T-----GSSETQPALDKTPHNPTAKRSPIQAKNRDRSPQNRQRQETQKEND 545
T +S +T P A +P Q +P+ ++R Q+ ND
Sbjct: 317 TKHIRPNNSTPYQRRAETSTKPKAVATP-QKVEAPSAPRLQKRAPRQQSND 366
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 1.4
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +2
Query: 224 SLTKP*RRGRIKEAISILENQDT--TKTAQTETGSDGLHIITPQPL-IDERSNRATPPAP 394
+LT P G + + IS + D+ T AQ S L P P+ + + +A PP P
Sbjct: 183 TLTAPAPLG-VDQKISQDQKPDSWLTYNAQFAQNSPQLAPSIPSPMKLSPANQQAMPPYP 241
Query: 395 VYRGDRQLGNTTRSGQNSTQPHSQTVADSSQEPRPFS 505
G + + T S + SS P+P+S
Sbjct: 242 QMLGPGSISSYTNSNLGPSAGFRPPTFFSSPSPQPYS 278
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 338 ITPQPLIDERSNRATPPAPVYRGDRQLGNTTRSGQN-STQPHSQTVADSSQ 487
+TPQ + N A P +P Y G + + G + +T P+S T A+SS+
Sbjct: 348 LTPQGTGFDCINPANPFSPGYSGKSSMKSDDNVGSSANTAPNSPTSANSSE 398
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Frame = +3
Query: 216 DDGRSPNPEDVDGLKKQFQSSKIKTPLKQHKLKPAPMVFTSSPPSL**TRGATAPPPLPP 395
+ G+ V +++F + KTP K+ P P++ S + P P+ P
Sbjct: 290 EQGKGMKWSIVPEFREEFIAKTRKTPRKRSPSSPVPLLAKKREGS------PSLPIPILP 343
Query: 396 STGETG------SSETQPALDKTPHNPTAKRSPIQAKNRDRSPQ 509
+T +S T A D+TP P SP A+ Q
Sbjct: 344 KMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPSTAETSAEEKQ 387
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 382 PPCPRLQGRQAARKHNPLWT 441
PP PRLQ R+A+ + P WT
Sbjct: 33 PPAPRLQSRRASMQETP-WT 51
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/55 (23%), Positives = 21/55 (38%)
Frame = +3
Query: 363 RGATAPPPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQAKNRDRSPQNRQRQE 527
R TAP PST T E ++ H A + D P++ +++
Sbjct: 106 RSITAPSKTEPSTPSTEKPEPSTPSGESDHGSNAGNESLPLLEEDHKPESLSKEQ 160
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = +2
Query: 332 HIITPQPLIDERS----NRATPPAPVYRGDRQLGNTTRSGQNSTQPHSQTVADSSQEPRP 499
H+ TP+ +++ERS +++ P+ G T + NST Q ++ + RP
Sbjct: 572 HVSTPEKIVEERSIDEVSQSNTPSSKQLPQSVDGKTVTANANSTTVAKQPTSNVAL-TRP 630
Query: 500 FSAKPTETRNTEGE*P*DLV-IPLQVLKRLPSVPRTQWK*SNRRFSPIENLS 652
KP T ++ + P + IP P + W+ +N + PIE+ S
Sbjct: 631 ---KPVRTATSQSKIPKPVKHIPSDSNNLDPQL--GPWRFANPKVDPIEDNS 677
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/87 (20%), Positives = 33/87 (37%)
Frame = +3
Query: 213 QDDGRSPNPEDVDGLKKQFQSSKIKTPLKQHKLKPAPMVFTSSPPSL**TRGATAPPPLP 392
Q + SP D+ ++ + +P P F+S P G P P
Sbjct: 154 QQNPSSPGSNDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSSLPLVSSKPTGTPFVPKSP 213
Query: 393 PSTGETGSSETQPALDKTPHNPTAKRS 473
PS+ + ++ + + P NP A ++
Sbjct: 214 PSSSPSTTNVSNASTSSAPINPRAPQT 240
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Frame = +2
Query: 347 QPLIDERSNRATPP-APVYRGDRQLG-NTTRSGQNSTQPHSQTVADSSQEPRPFSAKPTE 520
Q +++ +S PP A + +QL +S Q + H Q S P T
Sbjct: 235 QAMLNNQSRETFPPTAAQLQQLKQLHYRQLQSVQQQQKQHQQKKTPQSGST-PQMQNTTS 293
Query: 521 TRNTEGE*P*DLVIPLQVLKRLPSVPRTQWK*SNRRFSP 637
T P P+ + +PS P+T+ SN +F P
Sbjct: 294 QPTTHDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRP 332
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 318 APMVFTSSPPSL**TRGATAPPPLPPSTGETGSSETQPALDKTPHNPTAK-RSPIQAKNR 494
+P + + S PSL +GA +P T T + T DK N A R I+ K +
Sbjct: 229 SPDLASVSSPSLSSYKGAQSPNANSKRTKATSAIRTAAEEDKRRRNTAASARFRIKKKLK 288
Query: 495 DRSPQNRQRQETQKENDLE 551
++ + ++ T+K LE
Sbjct: 289 EQQLERTAKELTEKVAILE 307
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 372 TAPPPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQAKNRDR 500
TA PP PPS +TG T+P H + P+ AK R +
Sbjct: 372 TAAPP-PPSRRKTGGLNTRP---YPQHAESQMSLPLTAKERSK 410
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 ALDKTPHN-PTAKRSPIQAKNRDRSPQNRQRQETQKENDLEI 554
A+ + P N PT + S R P +R Q+ K ND +
Sbjct: 573 AVSRLPENLPTTRSSSNNPIEASRPPFSRDEQDISKANDFRV 614
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 50 VHALRPDHPQVQLVVLRRLQE 112
VH L D PQ+Q+ +LR L++
Sbjct: 472 VHYLNNDDPQIQIEILRSLKD 492
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 252 GLKKQFQSSKIKTPLKQHKLKPAPMVFTSSPPSL**TRGATAPPPLPPSTGETGSSETQP 431
GL+ F K +P+K +K P+ +VF + S + P + + + + ET+P
Sbjct: 50 GLRGNFLIDKRLSPVKFNKYSPSDIVFYNIGSSRLYSTETPTPSKVKEAPKQVAAEETKP 109
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 381 PPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQA 485
PP PP+ T S+ T ++ + +P + SP A
Sbjct: 282 PPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDA 316
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 371 NRATPPAPVYRGDRQLGNTTRSGQNSTQPHSQTVADSSQEPR 496
+++T +Y R++ TR + T P + T++++ Q PR
Sbjct: 59 SQSTNDRDIY-SPREIDQYTRKVSSRTDPSTSTISNARQHPR 99
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 141 PVSKSYQLMKALTFFSSYKKDNNMQDDGRSPNPEDVDGLKKQFQSSKIKTPLKQHKLKPA 320
P S Q ++A F S++ N + N E ++ +K + I LKQHKL P
Sbjct: 258 PNSNDLQPLQAEAFHSAH---NGYSSSTLNLNSE-LNVMKDHDLQAPIPRALKQHKLPPI 313
Query: 321 PM 326
P+
Sbjct: 314 PV 315
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.6
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Frame = +2
Query: 281 NQDTTKTAQTETGSDGLHIITPQPLIDERSNRAT-------PPAP-VYRGDRQLGNTTRS 436
N TA + G+ G H PQP + N T PAP VYR + T+
Sbjct: 322 NTPFNSTATVDVGAAGSHFPYPQPSNLDAINAKTYFQSSSNSPAPYVYRNNLPPSATSFQ 381
Query: 437 GQNSTQP--HSQTVADSSQEPRPFSAKPTETRNTEGE*P*DLVIPLQVL 577
+S P TV + PR + T+ P V P L
Sbjct: 382 PSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQSHVPSAKVPPTSKL 430
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 240 EDVDGLKKQFQSSKIKTPLKQHKLKPAPMVFTSS 341
E L QF+ + TP K LKP MVF S
Sbjct: 217 EQNKALLVQFKPKLMATPFKMPVLKPHDMVFLIS 250
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 18 GLVMKSFLCPESTLFDQTILK---CNWWFYVDCKN 113
G + F C +S L Q+IL CN +++ DC N
Sbjct: 404 GTPILCFRCHKSALVSQSILACDYCNSYWHPDCLN 438
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 291 PLKQHKLKPAPMVFTSSPPSL**TRGA-TAPPPLPPSTGETGS 416
P+ P + TS+PP + GA +APPP+P + E S
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -3
Query: 122 LPGVLAVDVEPPVALEDGLVEE--RGLGAEE 36
+ G+LA D E VAL D +V+ +G+GAE+
Sbjct: 1 MEGILAFDRELDVALLDRVVQTFYQGVGAEQ 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +3
Query: 366 GATAPPPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQAKNRDRSPQNRQRQ 524
G PPP PP+ GS PA P + S + + +QR+
Sbjct: 774 GPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLTEEQKIQLEEARKQRK 826
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 486 KNRDRSPQNRQRQETQKENDLE 551
K +R + R+RQE ++EN+L+
Sbjct: 437 KKDEREKEKRKRQEEEEENNLD 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,491
Number of Sequences: 5004
Number of extensions: 66281
Number of successful extensions: 330
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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