Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0549
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.21 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 645 FSIGLNLLLDYFHCV 601
           FS+GL LLLD F+CV
Sbjct: 601 FSLGLFLLLDMFNCV 615


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/64 (21%), Positives = 22/64 (34%)
 Frame = +3

Query: 360  TRGATAPPPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQAKNRDRSPQNRQRQETQKE 539
            T G  +PPP   S     S   Q    +TP         +++   +  P       T+  
Sbjct: 1748 TEGCASPPPAATSMKSVSSRRRQQRKQQTP-------GDVESDESESDPDQLTSSRTESS 1800

Query: 540  NDLE 551
            N L+
Sbjct: 1801 NQLD 1804


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/64 (21%), Positives = 22/64 (34%)
 Frame = +3

Query: 360  TRGATAPPPLPPSTGETGSSETQPALDKTPHNPTAKRSPIQAKNRDRSPQNRQRQETQKE 539
            T G  +PPP   S     S   Q    +TP         +++   +  P       T+  
Sbjct: 1744 TEGCASPPPAATSMKSVSSRRRQQRKQQTP-------GDVESDESESDPDQLTSSRTESS 1796

Query: 540  NDLE 551
            N L+
Sbjct: 1797 NQLD 1800


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/65 (21%), Positives = 27/65 (41%)
 Frame = +2

Query: 305  QTETGSDGLHIITPQPLIDERSNRATPPAPVYRGDRQLGNTTRSGQNSTQPHSQTVADSS 484
            QT +G  G+    P  ++  +    T P+P  RG         + Q   Q  ++  +  +
Sbjct: 963  QTVSGG-GMGGCQPGGVVQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQAKPQSQEA 1021

Query: 485  QEPRP 499
             +P+P
Sbjct: 1022 NKPKP 1026


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 375 APPPLPPSTGETGSSETQPALD 440
           APPP PPS+    S++     D
Sbjct: 342 APPPPPPSSSGPDSAKLDKIFD 363


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 364 EEQPRHPPCPRLQGRQAARKHNPLWTKLHTTPQ 462
           E+ P  PP PRL    + +  +      HTT +
Sbjct: 207 EQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDE 239



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 576 STCSGITKSQGHS 538
           +  SG+TK++GHS
Sbjct: 634 NVASGLTKARGHS 646


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 378  PPPLPPSTGE 407
            PPP PPS+G+
Sbjct: 1357 PPPPPPSSGQ 1366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,754
Number of Sequences: 438
Number of extensions: 5088
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)