Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0548
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    24   1.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.8  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.7  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.7  

>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 381 ALISCLKFIMQHSINYSAIFSDCSSAIQAISKNPIKNCLEN 503
           AL   L  I +HS    +I ++    +  +SK P  N L+N
Sbjct: 4   ALCFALMLIARHSEVQESIVAEMREVLGDLSKKPSYNDLQN 44


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 321 NHYKLHKLPPETSVFTGECIALISCLKFIMQHSINYSAIFS-DCS 452
           +H+ L   PP+ S +     A         Q + NYS+    DCS
Sbjct: 54  HHHHLQARPPQDSPYDASVAAACKLYSSEGQQNSNYSSNSKPDCS 98


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 309 HPNANHYKLH 338
           HPN NHY  H
Sbjct: 385 HPNYNHYGYH 394


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 309 HPNANHYKLH 338
           HPN NHY  H
Sbjct: 333 HPNYNHYGYH 342


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 KRQLKIFKHGRRKMATVEFIFTDAS 269
           +RQ+KI+   RR  A  +  FT+ S
Sbjct: 224 ERQIKIWFQNRRMKAKKDTKFTEQS 248


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 KRQLKIFKHGRRKMATVEFIFTDAS 269
           +RQ+KI+   RR  A  +  FT+ S
Sbjct: 224 ERQIKIWFQNRRMKAKKDTKFTEQS 248


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 378 IALISCLKFIMQHSINYSAIFSDCSSAIQAISKNP 482
           + +++ LKFI +  I    I   C SA   I + P
Sbjct: 287 LVVVTFLKFIKKIQIFGIMITKACMSASNLIQRTP 321


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 KRQLKIFKHGRRKMATVEFIFTDAS 269
           +RQ+KI+   RR  A  +  FT+ S
Sbjct: 224 ERQIKIWFQNRRMKAKKDTKFTEQS 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,890
Number of Sequences: 336
Number of extensions: 3510
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)